FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_PHANO (Eukaryotic translation initiation factor 3 subunit I OS=Phaeosphaeria nodorum GN=TIF34 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 79/182 (43.41%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER LT +KYN DGD++FS +KDH      + NGER+GTY GH GA+W  DV+ DS  L TG AD T +LW V+TG  L T+ F++  +  +F+   +  +  T+      S I V  I  DP A Q  E VL +   + +   A +  L + IIS  ED  V  WD +TG+LL
Sbjct:    1 MRPILLSGHERALTQVKYNGDGDIIFSVSKDHVDAD--SHNGERIGTYHGHQGALWTVDVNPDSTLLATGGADNTLRLWEVQTGKLLHTWEFNTSIKRCEFSPDGRQLLGVTEKRSGHLSTIVVYEINPDPEAKQSDEQVLRIVCDESKATVAGFSYLAKYIISGHEDGSVTQWDGKTGELL 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_YARLI (Eukaryotic translation initiation factor 3 subunit I OS=Yarrowia lipolytica GN=TIF34 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL++GHERPLT LKYN++GDLLFS A+D T  VW++ NGERLGT  G  GA +  D    +  + TGSADQTA+LW+++TG  + ++NF +  + V+F+      ++ ++  M     I V  +  D  A Q  E ++ +K  +G  + + AVW    + II+A  D  +  +D  TG+ +
Sbjct:    1 MRPILLQGHERPLTQLKYNREGDLLFSVARDKTICVWYSHNGERLGTLEGSGGANFSVDADPTTTIVATGSADQTARLWDIKTGKTIHSWNFKTTVKRVEFSPDGTKLIVLSEKMMGYPGGISVFNVKADVNATQETEPIMDIKPEEGADKFSFAVWSYGGKYIITAHADGSLSKYDGATGEFI 184          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_EMENI (Eukaryotic translation initiation factor 3 subunit I OS=Emericella nidulans GN=tif34 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 75/183 (40.98%), Postives = 105/183 (57.38%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP--ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDLLFS AKD     W++ NGERLGTY GH GA+W  DVS +++ L TGSAD + +LWNV+TG  +  + F +  + V+F+      +  T+  M     I V  I  D    +Q  E  L +   + +   A W  L + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLAGHERSLNQIKFNRDGDLLFSVAKDKIVCAWWSANGERLGTYSGHLGAIWTVDVSPNTVLLATGSADNSVRLWNVKTGECVKVWEFPTAVKRVEFSPDGSKVLAVTEKRMGFLGTIAVLDINYDGDFTNQAEEPSLRITCTESKATVAGWSYLGKYIIAGHEDGSVSQYDAKTGEQL 183          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_PICST (Eukaryotic translation initiation factor 3 subunit I OS=Pichia stipitis GN=TIF34 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 74/184 (40.22%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP---ADQGGESVLILKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRPI + GHER LT +KYN++GDLLFS AKD+  ++W++ NGERLGT  GH G +W  DV  D+    TG  D   KLW VETG  +FT+   SP R V F+      +   D  M     I V  I  D     +Q  E  L+++ PQ   +   A W      IIS  +D  +  +D +TG+
Sbjct:    1 MRPIKLMGHERSLTQVKYNREGDLLFSVAKDNAASIWYSSNGERLGTLEGHQGVIWSIDVDPDTHLCATGGGDLAIKLWKVETGKCVFTWESPSPVRRVAFSPDGSRLLAIADQVMGHIGTIVVYEINHDDESLTNQSTEPSLVIETPQDGAKATVAGWSANGEFIISGHDDGYIYKYDAQTGE 184          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_NEOFI (Eukaryotic translation initiation factor 3 subunit I OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif34 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.320e-31
Identity = 75/187 (40.11%), Postives = 106/187 (56.68%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA------DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDLLFS AKD     W++ NGERLGTY GH GA+W  DVS +++ L TGSAD T +LWNV+TG  +  ++F +  + V+F       +  T+  M     I V  I+   +      +Q  E  L +   + +   A W  L + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLSGHERSLNQIKFNRDGDLLFSVAKDKIVCAWWSANGERLGTYSGHQGAIWTVDVSPNTVLLATGSADNTVRLWNVKTGECVKVWDFPTAVKRVEFNPDGSRLLAVTEKRMGFLGTIAVLDISYGDSQGGALENQADEPSLRITCTESKATVAGWSYLGKYIIAGHEDGSVSQYDGKTGEQL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ASPCL (Eukaryotic translation initiation factor 3 subunit I OS=Aspergillus clavatus GN=tif34 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.724e-31
Identity = 75/187 (40.11%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI------ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDLLFS +KD     W++ NGERLGTY GH GA+W  DVS +++ L TGSAD T +LWNV+TG  +  ++F +  + V F+      +  T+  M     I V  I        D  +Q  E  L +   + +   A W  L + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLSGHERSLNQIKFNRDGDLLFSVSKDKVVCAWWSANGERLGTYTGHQGAIWTVDVSPNTVLLATGSADNTVRLWNVKTGECVKVWDFPTAVKRVAFSPDGSKLLAVTEKRMGFLGTIAVFDINYGNGQGEDLENQAEEPSLRITCSESKATVAGWSYLGKYIIAGHEDGSVSQYDGKTGEQL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ASPFU (Eukaryotic translation initiation factor 3 subunit I OS=Aspergillus fumigatus GN=tif34 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 76/187 (40.64%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDLLFS AKD     W++ NGERLGTY GH GA+W  DVS +++ L TGSAD T +LWNV+TG  +  ++F +  + V F       +  T+  M     I V  I    +  GG      E  L +   + +   A W  L + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLSGHERSLNQIKFNRDGDLLFSVAKDKIVCAWWSANGERLGTYSGHQGAIWTVDVSPNTVLLATGSADNTVRLWNVKTGECVKVWDFPTAVKRVAFNPDGSRLLAVTEKRMGFLGTIAVLDINYGDSQGGGLENQADEPSLRITCTESKATVAGWSYLGKYIIAGHEDGSVSQYDGKTGEQL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ASPFC (Eukaryotic translation initiation factor 3 subunit I OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif34 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 76/187 (40.64%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDLLFS AKD     W++ NGERLGTY GH GA+W  DVS +++ L TGSAD T +LWNV+TG  +  ++F +  + V F       +  T+  M     I V  I    +  GG      E  L +   + +   A W  L + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLSGHERSLNQIKFNRDGDLLFSVAKDKIVCAWWSANGERLGTYSGHQGAIWTVDVSPNTVLLATGSADNTVRLWNVKTGECVKVWDFPTAVKRVAFNPDGSRLLAVTEKRMGFLGTIAVLDINYGDSQGGGLENQADEPSLRITCTESKATVAGWSYLGKYIIAGHEDGSVSQYDGKTGEQL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CAEEL (Eukaryotic translation initiation factor 3 subunit I OS=Caenorhabditis elegans GN=eif-3.I PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.841e-31
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD--QGGES 526
            MRP+ +KGHER LT +++N++GDL FSCAKD  P VW+ +NGER+G+Y GHNGAVW  DVS D+   +T S D T K+W+ E G  L+T N  +P +S  F+    L   TT    +  S   V+ + RD +   +GGES
Sbjct:    1 MRPLSLKGHERALTRVRFNREGDLTFSCAKDKKPCVWYTENGERIGSYDGHNGAVWDIDVSWDTTKCVTASGDLTVKIWDAELGNCLYTINHQTPMKSCGFSYSGNLVCFTTQKMTKNLSTFQVRDL-RDSSQMVEGGES 139          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DEBHA (Eukaryotic translation initiation factor 3 subunit I OS=Debaryomyces hansenii GN=TIF34 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 72/185 (38.92%), Postives = 104/185 (56.22%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI--ARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI + GHER LT +K+N++GDL+FS AKD T ++W++ NGERLGT  GH G +W  DV  D++   TGSAD T KLW +ETG  + ++   +P R V F+  +K  +  TD  M     I V  I    D   Q  +  LI+  +    ++  A W      II+  ED  V  +++ TG+ +
Sbjct:    1 MRPIKLMGHERSLTQVKFNREGDLIFSVAKDSTASIWYSSNGERLGTLEGHIGTIWSIDVDADTILCATGSADLTIKLWKIETGECVQSWEMPTPVRRVAFSPDNKRLLAVTDQVMGQTGTISVFDINYEGDYTKQQSKPSLIIETRSDAKKVTVAGWSANGDFIIAGHEDGYVSKYNSSTGEFI 185          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_PHANO2.660e-3243.41Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_YARLI4.537e-3239.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_EMENI7.740e-3240.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_PICST1.320e-3140.22Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_NEOFI1.320e-3140.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_ASPCL1.724e-3140.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_ASPFU2.252e-3140.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_ASPFC2.252e-3140.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CAEEL3.841e-3146.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DEBHA1.118e-3038.92Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
back to top