FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CAEBR (Eukaryotic translation initiation factor 3 subunit I OS=Caenorhabditis briggsae GN=eif-3.I PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.906e-30
Identity = 58/125 (46.40%), Postives = 82/125 (65.60%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 487
            MRP+ +KGHER LT +++N++GDL FSCAKD  P VW+ +NGER+G+Y GHNGAVW  DVS D+   +T S D T K+W+ E G+ ++T N  +P +S  F+    L   TT    +  S + V+
Sbjct:    1 MRPLSLKGHERALTRVRFNREGDLTFSCAKDKKPCVWYTENGERIGSYDGHNGAVWDIDVSWDTSKCVTASGDLTVKIWDAELGSCIYTINHQTPMKSCGFSYSGNLVCYTTQKMTKNLSTVQVR 125          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CANGA (Eukaryotic translation initiation factor 3 subunit I OS=Candida glabrata GN=TIF34 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP--------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLXE 661
            MRPI++ GHERPLT +KYN++GDLLF+C+KD + +VW+++NGERLGT  GH G++W  D    S+  +TGSAD T K+W +  G  + T+N   P + V+F+   K  +   D  M+   +I +  + R+P         ++   S++  +G     + A W    + II+  +D  +  +DT+ G  L E
Sbjct:    1 MRPIVLMGHERPLTQVKYNREGDLLFTCSKDISASVWYSNNGERLGTLDGHMGSIWSIDSDHTSLYCVTGSADYTIKVWTLMNGQCVQTWNCPVPVKRVEFSPCGKYILAILDNVMKKPGSIEIYEVKRNPETNEITEFVEEPIHSIVTHEGLDA-ASVAGWSGEGKYIIAGHKDGKISKYDTQDGYKLVE 190          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_COCIM (Eukaryotic translation initiation factor 3 subunit I OS=Coccidioides immitis GN=TIF34 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.247e-30
Identity = 72/187 (38.50%), Postives = 105/187 (56.15%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRI------ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL++GHER L  +++N DGDLLFS AKD     W++ NGERLGTY GH GA+W  DVS  ++ L TG+AD T +LWN ++G  +  ++F +  + V+F+      +  T+  M     I V  +        +  DQ  E  L +   Q +   A W  L + II+  ED  V  +D++TG+ L
Sbjct:    1 MRPILLQGHERSLNQIRFNHDGDLLFSVAKDKILCAWYSANGERLGTYHGHQGALWTVDVSPGTVLLATGAADNTVRLWNAKSGECVKVWDFPTAVKRVEFSPDGSRLLAVTEKRMGYLGTIVVFDVRYGDGEGNNLDDQTDEPSLKITCEQSKATVAGWSFLGKYIIAGHEDGSVSQYDSKTGEQL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_BRUMA (Eukaryotic translation initiation factor 3 subunit I OS=Brugia malayi GN=Bm1_48300 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 646
            M+P+ +KGH+R LT ++ N+DGDLLFS  KD +P VW+ +NGER+GTY GHNG +W  DVS D+    + S D   KLWN ETG  + + +  + ARS+  +    L   TT    +  +++ V  I RD +   GE+     K  Q + N  VW  L+ T+    E   V  +D   G
Sbjct:    1 MKPLSLKGHDRALTRVRINRDGDLLFSAGKDKSPCVWYMENGERIGTYDGHNGVIWDIDVSWDTRHFCSASGDVFVKLWNCETGDVINSVSTPTAARSISLSYSGNLIAFTTIKMTQNVASLFVYDI-RDGSQMSGENQPTFRKSLQTQANSCVWTHLDDTVCVGNEKGNVHQYDIRKG 178          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CANAL (Eukaryotic translation initiation factor 3 subunit I OS=Candida albicans GN=TIF34 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.753e-29
Identity = 72/186 (38.71%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---DQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI + GHER LT +KYN++GDLLFS AKD+  ++W++ NGERLGT  GH G +W  DV  ++    TG  D   KLW VE G  ++T++  SP R V F+   K  +   D  M     + V  I  D A    Q  E  L++  K    +   A W      II   ++  V  +D++TGKL+
Sbjct:    1 MRPIKLMGHERSLTQVKYNREGDLLFSVAKDNAASIWYSSNGERLGTLEGHQGVIWSIDVDPETHLCATGGGDLAIKLWKVENGQCVYTWDSPSPVRRVAFSPDGKKLLAIADQVMGHIGTVSVFDINDDDATLSQQKAEPSLVIETKSEGSKATVAGWSGDGDYIIVGHDNGYVSKYDSKTGKLV 186          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ASPNC (Eukaryotic translation initiation factor 3 subunit I OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif34 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.696e-29
Identity = 69/191 (36.13%), Postives = 105/191 (54.97%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF----------AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER L  +K+N+DGDL+FS AKD     W++ NGERLGTY GH GA+W  DVS ++  L TGSAD T +LWNV+TG  +  ++F +  + V                ++  + T   +++N   ++   A +P+       L +   + +   A W  + + II+  ED  V  +D +TG+ L
Sbjct:    1 MRPILLSGHERSLNQIKFNRDGDLIFSVAKDKIVCAWWSANGERLGTYNGHQGAIWTVDVSPNTQILATGSADNTVRLWNVKTGECIKVWDFPTAVKRVRVHPPMEADCWPVTEKRMGFLGTIAVLDINYGENLTEQAEEPS-------LRITCTESKATVAGWSYMGKYIIAGHEDGSVSQYDGKTGEQL 184          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CRYNE (Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans GN=TIF34 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.784e-28
Identity = 68/186 (36.56%), Postives = 100/186 (53.76%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY------RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            M+PI+++GHER L  + +N +GDLLFS +KD     W+  NGERLGTY       GHNG+VW   V   +  L+TG AD   KLW V+TG  L+T+ F +  + V +   D + +  T+      S I +  I R DP  Q    +  ++    R   A+W PL+  II+  E   +  +D +TG+
Sbjct:    1 MKPIILQGHERSLNQIVFNSEGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNGSVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITEQRSGQPSVIRIFSINREDPRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKIAKYDVKTGE 186          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_KLULA (Eukaryotic translation initiation factor 3 subunit I OS=Kluyveromyces lactis GN=TIF34 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.975e-28
Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR---------AVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI++KGHERPLT +K+N+DGDL+F+C+KD   ++W+A NGERLGT   H+G +W  DV   +   +TG AD   K+W V TG  + + +  SP   V+F+      +I  D  M    +I V  + R   ++ GE V + + P   I           A W    + II+  ED  +  +  E G+ +
Sbjct:    1 MRPIVLKGHERPLTQVKFNRDGDLVFACSKDSVASIWYAINGERLGTLDDHSGTIWSIDVDESTTYALTGGADFCFKIWKVATGVAVHSVSTRSPVLRVEFSPDGSKLLIVLDAVMGHIGSIVVYSLIR---NENGEIVNVKEEPDYEITTIEQATKVFVASWSYNGKYIIAGHEDGQISAYYGENGEFV 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_ASHGO (Eukaryotic translation initiation factor 3 subunit I OS=Ashbya gossypii GN=TIF34 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.855e-28
Identity = 67/188 (35.64%), Postives = 108/188 (57.45%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQ------GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI++ GHER LT +KYN++GDL+F+  KD+  +VW+A NGERLGT  GHNG++W  DV + +   +TGSAD + K+W V  G+   +++  +P R V+F+  GD++  +  D  M    AI V  + RD  +Q      G    ++ +     +  A W    + I++  +D  +  ++  TG+ L
Sbjct:    1 MRPIMLMGHERSLTQVKYNREGDLIFTSGKDNVASVWYAMNGERLGTLEGHNGSIWSIDVDQHTEYAVTGSADFSVKVWRVRDGSIAHSWDTRTPVRRVEFSPTGDRVLAV-LDNVMNYAGAIVVFSVTRDANNQITGFNSGLSCEILTQEGCAPVLVASWSYDGKYIVAGHQDGKISKYNGVTGECL 187          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_YEAST (Eukaryotic translation initiation factor 3 subunit I OS=Saccharomyces cerevisiae GN=TIF34 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 58/132 (43.94%), Postives = 82/132 (62.12%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA 508
            M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT  GH G +W  DV   +   +TGSAD + KLW+V  G  + T+    P + V+F+      +   D  M+   +I++  I RD A
Sbjct:    1 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA 132          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_CAEBR1.906e-3046.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CANGA2.490e-3036.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_COCIM4.247e-3038.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_BRUMA2.108e-2938.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CANAL2.753e-2938.71Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_ASPNC4.696e-2936.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CRYNE1.784e-2836.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_KLULA3.975e-2835.79Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_ASHGO8.855e-2835.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_YEAST1.279e-2643.94Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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