FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/177 (26.55%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S  +++GS D++ ++W+V+TG  L T    S P  +V F     L V         +S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK L
Sbjct:   83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/177 (26.55%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S  +++GS D++ ++W+V+TG  L T    S P  +V F     L V         +S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK L
Sbjct:   83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/177 (26.55%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S  +++GS D++ ++W+V+TG  L T    S P  +V F     L V         +S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK L
Sbjct:   83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 47/177 (26.55%), Postives = 90/177 (50.85%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH+  ++ + ++ D +LL S + D T  +W   +G+ L T +GH+  V+CC+ +  S  +++GS D++ ++W+V+TG  L T    S P  +V F     L V         +S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK L
Sbjct:   83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 51/181 (28.18%), Postives = 83/181 (45.86%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLXE 661
            +++GH  P+   ++  D   L SC++D +   W   +      Y+GH   VW  D+S  S+   +GS D+TA+LW+ +    L  +    +    V F      LA  +TD  + L SA            Q G SV +  G +G +    + P  + + SAGED  +++WD  +G L  E
Sbjct:  337 ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSA------------QQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKE 505          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SEL10_CAEBR (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis briggsae GN=sel-10 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.162e-11
Identity = 52/188 (27.66%), Postives = 87/188 (46.28%), Query Frame = 2
Query:  116 RPIL----MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            RPI+    ++GHE   +T ++ + D  LL + + D+T  VW  D+GE   T  GH+G VW   +S+    +++GS D+T K+W  E G  L T    +            L   + D  +   ++ + +HV+ +      QG ++ +      G I           ++S G D  V+IWD  +GK L
Sbjct:  245 RPIMGSAILRGHEEHVITCMQIHND--LLVTGSDDNTLKVWSIDDGEVKHTLNGHSGGVWTSQISQCGRYIVSGSTDRTVKVWRAEDGFLLHTLQGHTSTVRCMAMANTTLVTGSRDCTLRVWDIETGLHVRTL------QGHQAAVRCVQFDGNI-----------VVSGGYDFTVKIWDAFSGKCL 413          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 51/177 (28.81%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            ++GH   +  + +N   GD + + + D T  +W A+ G+   T+RGH   + C   +  S  + TGS D TAKLW+VE+G ++ T        +  FA    L   TT   +   S  H   +   P+   G  V +L G +G I+   +      I +A  D   ++WD E G+ L
Sbjct:  130 LEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTL-------AGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPS---GRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCL 296          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: Y2124_ANASP (Uncharacterized WD repeat-containing protein all2124 OS=Anabaena sp. (strain PCC 7120) GN=all2124 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 48/178 (26.97%), Postives = 80/178 (44.94%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            ++GH+  +  +  ++DG  + S + D T  +W  D G    T  GH  AV+    S D  T+ +G +D+T KLW    G  L T    +    +V F+  G  LA  ++D  ++L                 G+ ++ L G    +    + P  +TI +  ED  V++W  + GKLL
Sbjct: 1068 LEGHKDGVISISISRDGQTIASGSLDKTIKLWSRD-GRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDT------------TSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLL 1232          

HSP 2 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 50/169 (29.59%), Postives = 77/169 (45.56%), Query Frame = 2
Query:  134 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 634
            GHE+ +  + ++ DG  L S + DH+  +W   +G+ L T  GH+  V     S D  T+  GS D+T KLW+ + G  L T N       S+ F+  G  LA  + D        I + RIA       G+ V  LKG    +    +    + I SA  D  +++W+
Sbjct: 1153 GHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASAD------KTIKLWRIA------DGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWN 1309          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: Y2800_ANASP (Uncharacterized WD repeat-containing protein alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 49/179 (27.37%), Postives = 80/179 (44.69%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMEL-NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH   +  + ++ DG+ L S A DHT  +W    G+ L T + H G V     S D  TL +GS D+T K+WN  TG  L T+    +   S+ ++   K+ V  + D  ++L +   H+              +  L G    +    + P  +T+     D  VR+W+  TG+ L
Sbjct:  764 LTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHI-------------CIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCL 929          

HSP 2 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 46/180 (25.56%), Postives = 80/180 (44.44%), Query Frame = 2
Query:  122 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            ++ +GH   + ++ ++ DG++L SC  D    +W   +G  + T  GH   V+      D  TL + S D+T KLW+++ G  L T    +   R V F+  G+ LA    D  ++L                 G+ +  LK   G +    +    +T+ S   D  ++IW+  TG+ L
Sbjct:  678 LICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDV------------SQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNYHTGECL 845          

HSP 3 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 49/174 (28.16%), Postives = 78/174 (44.83%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 643
            + GHE  +  + ++ DG+ L S + D T  +W   +G  L T  GH   V C   S D  TL + +AD T KLW+V  G  L T    +   RSV F A G  LA  + D  +++ +               GE +    G    +    + P ++ ++S   D  +++WD +T
Sbjct:  722 LTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQTLASGSGDRTIKIWNY------------HTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQT 883          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SNR40_HUMAN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens GN=SNRNP40 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 415
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F
Sbjct:  105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTF 201          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
WDR5_RAT1.162e-1126.55WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE1.162e-1126.55WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN1.162e-1126.55WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN1.162e-1126.55WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
TAF5L_MOUSE1.162e-1128.18TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
SEL10_CAEBR1.162e-1127.66F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]
WDR69_DANRE1.518e-1128.81WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
Y2124_ANASP1.982e-1126.97Uncharacterized WD repeat-containing protein all21... [more]
Y2800_ANASP2.588e-1127.37Uncharacterized WD repeat-containing protein alr28... [more]
SNR40_HUMAN4.415e-1138.14U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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