FC923115
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 415 +KGH + L YN DG +LFS + D T VW ++ GER+ +GH V C +R L+ TGS D T KLW++ A + TF +V F Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTF 202
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 2 Query: 128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655 + GH+ ++ + ++ D LL S + D T VW G+ L T +GH+ V+CC+ + S +++GS D++ ++W+V TG L T S P +V F L V +S + RI + Q ++++ P ++ + P + I++A D +++WD GK L Sbjct: 110 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 276
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 2 Query: 134 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655 GH ++ + ++ D L S + D T +W +G+ L T +GH+ V+CC+ + S +I+GS D+T K+W V+TG L T + S P +V F L V S + RI + Q ++++ P ++ + P + I++A D +++WD G+ L Sbjct: 81 GHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIV--------SGSYDGLCRIWDAASGQCLKTLVDDDNPP--VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL 245
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 2 Query: 128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 415 +KGH + L YN DG +LFS + D T VW ++ GER+ +GH V C +R L+ TGS D T KLW++ A + TF +V F Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTF 202 The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bpback to top |