FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SNR40_BOVIN (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus GN=SNRNP40 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 415
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTF 202          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            + GH+  ++ + ++ D  LL S + D T  VW    G+ L T +GH+  V+CC+ +  S  +++GS D++ ++W+V TG  L T    S P  +V F     L V         +S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   GK L
Sbjct:  110 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV--------SSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 276          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 48/175 (27.43%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  134 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            GH   ++ + ++ D   L S + D T  +W   +G+ L T +GH+  V+CC+ +  S  +I+GS D+T K+W V+TG  L T +  S P  +V F     L V          S   + RI    + Q  ++++    P   ++   + P  + I++A  D  +++WD   G+ L
Sbjct:   81 GHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIV--------SGSYDGLCRIWDAASGQCLKTLVDDDNPP--VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL 245          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 37/97 (38.14%), Postives = 51/97 (52.58%), Query Frame = 2
Query:  128 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 415
            +KGH   +  L YN DG +LFS + D T  VW ++ GER+   +GH   V  C  +R    L+ TGS D T KLW++   A + TF       +V F
Sbjct:  106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTF 202          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
SNR40_BOVIN4.415e-1138.14U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
WDS_DROME5.767e-1127.12Protein will die slowly OS=Drosophila melanogaster... [more]
WDR5B_HUMAN5.767e-1127.43WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
SNR40_MOUSE5.767e-1138.14U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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