FC923116

Overview
NameFC923116
Unique NameFC923116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923116_ssr549 microsatellite FC923116_ssr549:549..560. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.081e-74
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.081e-74
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.081e-74
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.081e-74
Identity = 138/149 (92.62%), Postives = 146/149 (97.99%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.081e-74
Identity = 134/149 (89.93%), Postives = 148/149 (99.33%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MA+QLT++QI+EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMI+EVDAD NGTIDFPEFLNLMARKMKDTDSEEELKEAF+VFDKDQNG+ISAA++RHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M+AK
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADVRHVMTNLGEKLTDEEVDEMIREADMDGDGQVNYEEFVRMMLAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_MACPY (Calmodulin OS=Macrocystis pyrifera PE=2 SV=3)

HSP 1 Score: 277.33 bits (708), Expect = 5.329e-74
Identity = 136/149 (91.28%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MMAK
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIIEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_METSE (Calmodulin OS=Metridium senile PE=1 SV=3)

HSP 1 Score: 276.944 bits (707), Expect = 6.960e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFVK+M +K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_LUMRU (Calmodulin OS=Lumbricus rubellus PE=2 SV=3)

HSP 1 Score: 276.944 bits (707), Expect = 6.960e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +MM+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMMSK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_PYTSP (Calmodulin OS=Pythium splendens PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.091e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 9.091e-74
Identity = 135/149 (90.60%), Postives = 145/149 (97.32%), Query Frame = 2 
Query:   68 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 514
            MADQLT++QI+EFKEAFSLFDKDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
The following BLAST results are available for this feature:
BLAST of FC923116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CALM_PROMN4.081e-7492.62Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PFIPI4.081e-7492.62Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_KARMI4.081e-7492.62Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_ALEFU4.081e-7492.62Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CALM2_PETHY4.081e-7489.93Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2[more]
CALM_MACPY5.329e-7491.28Calmodulin OS=Macrocystis pyrifera PE=2 SV=3[more]
CALM_METSE6.960e-7490.60Calmodulin OS=Metridium senile PE=1 SV=3[more]
CALM_LUMRU6.960e-7490.60Calmodulin OS=Lumbricus rubellus PE=2 SV=3[more]
CALM_PYTSP9.091e-7490.60Calmodulin OS=Pythium splendens PE=2 SV=1[more]
CALM_PHYIN9.091e-7490.60Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C05EF StrClemenN Citrus clementina cDNA clone C31701C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923116 ID=FC923116; Name=FC923116; organism=Citrus clementina; type=EST; length=698bp
GACAACCAAAAACGAGAGAAGTAAACACGGGAGCAGCTCTGTTTCTGTAT
AAGTTTTCTCAACGATAATGGCTGATCAACTCACCGATGATCAGATCTCT
GAATTTAAGGAAGCCTTCAGCCTCTTTGACAAGGATGGAGACGGGTGTAT
TACTACTAAGGAGCTTGGAACTGTTATGAGGTCACTCGGGCAGAACCCTA
CCGAAGCAGAACTCCAGGATATGATTAATGAAGTCGATGCTGACGGGAAT
GGTACCATTGACTTCCCGGAGTTCCTTAACTTGATGGCGCGCAAGATGAA
GGACACTGATTCAGAGGAGGAGTTAAAGGAGGCTTTTCGGGTTTTTGATA
AGGATCAGAATGGGTTCATTTCTGCTGCTGAACTCCGCCATGTGATGACA
AATCTTGGTGAGAAGTTGACTGATGAGGAAGTTGATGAGATGATTCGTGA
AGCTGATGTGGATGGTGATGGCCAGATCAATTATGAAGAGTTTGTTAAAG
TCATGATGGCCAAGTGAGAACCTCTCAACTATCACTTAAAAAAAAAATAA
TAAATAAATATCAAAATCAAAAGACTAAAAAATCAAAGTGAAGAGTGCAG
TTGTGACATCCTACATCGATCTAAAGAGGTCTTGGCTTGTTTAATATCCT
GTGAGCTCCTTGACTTGTGGTTGTGTTTAGGGTTGCAAGTCATCAAAT
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