FC923116

Overview
NameFC923116
Unique NameFC923116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CABP8_MOUSE (Calcium-binding protein 8 OS=Mus musculus GN=Caln1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 39/125 (31.20%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   89 DQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-----ELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMI 445
            +++ E +EAF + D+DG+G I+ +ELG  MRSLG  P+E EL  ++  +D DG+G +DF EF+ ++  K+  ++  +      +   F  FD  +   ++  EL+H++ +   + LT ++++ +I
Sbjct:   36 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---VTLEELKHILYHAFRDHLTMKDIENII 157          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: MLR2_CAEEL (Myosin regulatory light chain 2 OS=Caenorhabditis elegans GN=mlc-2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   71 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            A Q     I EFKEAF + D++ DG I   +L  +  S+GQ   ++++  MI E     +G I+F  FL L   ++  TD E  +  AF +FDK   G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   18 AAQFDQKTIQEFKEAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKE----ASGPINFTVFLTLFGERLTGTDPEATIVGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: MLRS_CHICK (Myosin regulatory light chain 2, skeletal muscle isoform OS=Gallus gallus GN=MYLPF PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   92 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            QI EFKEAF++ D++ DG I   +L     ++G+ N    EL  MI E     +G I+F  FL +   K+K  D E+ +  AF+V D D  G I  + L  ++T   ++ T EE+  M      D  G ++Y+    V+
Sbjct:   25 QIQEFKEAFTVIDQNRDGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA----SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTQCDRFTPEEIKNMWAAFPPDVAGNVDYKNICYVI 159          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: MLR1_CAEEL (Myosin regulatory light chain 1 OS=Caenorhabditis elegans GN=mlc-1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   71 ADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTN-LGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            A Q     I EFKEAF + D++ DG I   +L  +  S+GQ   ++++  MI E     +G I+F  FL L   ++  TD E  +  AF +FDK   G I   +L  ++ N  GE L ++EV  M +       G+++Y+ F  ++
Sbjct:   18 AAQFDQKTIQEFKEAFGIMDQNKDGIIDKSDLKDLYASMGQIAPDSQIDAMIKE----ASGPINFTVFLTLFGERLTGTDPEATIIGAFAMFDKKDCGKIKEDDLIKILQNKRGEPLDEDEVKAMYKGKPPIEGGEVDYKAFAHLI 159          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CANB1_DICDI (Calcineurin subunit B type 1 OS=Dictyostelium discoideum GN=cnbA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 47/146 (32.19%), Postives = 80/146 (54.79%), Query Frame = 2
Query:   83 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVM-----TNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            ++ ++ +    F + DKDG G +TT E  ++   L  NP    L+ +I   D + +  I+F EF+  +A        E++LK  F+++D D +GFIS  EL  V+     TNL +    + VD+ I E D D DG+I+++EF+ ++
Sbjct:   23 SEAELKKLYRRFQMLDKDGSGTLTTDEFLSIP-DLALNPL---LERVIQIFDQNKDNEIEFFEFVGTLATLSHKGTKEDKLKFLFQIYDIDCDGFISNGELFQVLKMMVGTNLNDVQLQQIVDKTIIEGDYDKDGKISFDEFIHMI 164          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: MLRS_BOVIN (Myosin regulatory light chain 2, skeletal muscle isoform OS=Bos taurus GN=MYLPF PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 2
Query:   92 QISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            QI EFKEAF++ D++ DG I  ++L     ++G+ N    EL  M+ E     +G I+F  FLN+   K+K  D E+ +  AF+V D +  G I    L  ++T   ++ + EE+  M      D  G ++Y+    V+
Sbjct:   27 QIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPINFTVFLNMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 161          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 44/141 (31.21%), Postives = 78/141 (55.32%), Query Frame = 2
Query:   86 DDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEE-ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            +D+  E +  FS  D + DG I+ +EL     +LG+  ++ E    +   D DG+G +DF EF  L+  K+ D + ++ ELK AFR++  +    I+   L+ ++  LGE  T ++   MI   D++ DG ++++EF  +M
Sbjct:   38 EDKNRELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQLI--KVDDEEEKKMELKGAFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMISAFDLNADGVLSFDEFALMM 176          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: ALLB3_BETVE (Calcium-binding allergen Bet v 3 OS=Betula verrucosa GN=BETVIII PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 2
Query:    2 TTKNERSKHGXXXXXXXXXXTIMADQLTDDQIS--EFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDT----------DSEEELKEA------------FRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            T   E++ HG          +  + +L  + ++    +  F LFDK+ DG IT  EL   +  LG     +EL+  +     +GN  + F +F++L  + + D+          D+EE+++++            F+VFD+D +G+ISA EL+ V+  LG  E    + V++MI   D + DG++++ EF  +M
Sbjct:    5 TEAMEKAGHGHASTPRKRSLSNSSFRLRSESLNTLRLRRIFDLFDKNSDGIITVDELSRALNLLGLETDLSELESTVKSFTREGNIGLQFEDFISL-HQSLNDSYFAYGGEDEDDNEEDMRKSILSQEEADSFGGFKVFDEDGDGYISARELQMVLGKLGFSEGSEIDRVEKMIVSVDSNRDGRVDFFEFKDMM 197          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: FIMB_DICDI (Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   83 TDDQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAR 292
            ++ +ISEFK +F+ FD++GDG I+  EL  ++   G+  T  E++DMI EVD DGNG+IDF EFL +M +
Sbjct:    5 SESEISEFKASFNQFDENGDGQISALELQKILTKCGEKVTGVEVRDMIKEVDTDGNGSIDFKEFLQVMQK 74          
BLAST of FC923116 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 48/142 (33.80%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  116 FSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMK----------DTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADVDGDGQINYEEFVKVM 505
            F LFDK+ DG IT +EL   +  LG +   ++L+  ++         + F +F  L     +          D   E +L+EAF VFD+D +GFISA EL+ V+  LG  E    E+V++MI   D + DG++++ EF  +M
Sbjct:   33 FDLFDKNNDGFITVEELSQALSRLGLDADFSDLKSTVDSFIKPDKTGLRFDDFAALHKTLDESFFGGEGSCCDGSPESDLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMM 174          
The following BLAST results are available for this feature:
BLAST of FC923116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 482
Match NameE-valueIdentityDescription
CABP8_MOUSE8.094e-1431.20Calcium-binding protein 8 OS=Mus musculus GN=Caln1... [more]
MLR2_CAEEL1.057e-1332.19Myosin regulatory light chain 2 OS=Caenorhabditis ... [more]
MLRS_CHICK1.381e-1333.09Myosin regulatory light chain 2, skeletal muscle i... [more]
MLR1_CAEEL1.381e-1332.19Myosin regulatory light chain 1 OS=Caenorhabditis ... [more]
CANB1_DICDI1.381e-1332.19Calcineurin subunit B type 1 OS=Dictyostelium disc... [more]
MLRS_BOVIN3.076e-1331.65Myosin regulatory light chain 2, skeletal muscle i... [more]
CML38_ARATH3.076e-1331.21Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
ALLB3_BETVE3.076e-1327.32Calcium-binding allergen Bet v 3 OS=Betula verruco... [more]
FIMB_DICDI4.017e-1348.57Fimbrin OS=Dictyostelium discoideum GN=fimA PE=2 S... [more]
CML43_ARATH4.017e-1333.80Probable calcium-binding protein CML43 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC31701C05EF StrClemenN Citrus clementina cDNA clone C31701C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923116 ID=FC923116; Name=FC923116; organism=Citrus clementina; type=EST; length=698bp
GACAACCAAAAACGAGAGAAGTAAACACGGGAGCAGCTCTGTTTCTGTAT
AAGTTTTCTCAACGATAATGGCTGATCAACTCACCGATGATCAGATCTCT
GAATTTAAGGAAGCCTTCAGCCTCTTTGACAAGGATGGAGACGGGTGTAT
TACTACTAAGGAGCTTGGAACTGTTATGAGGTCACTCGGGCAGAACCCTA
CCGAAGCAGAACTCCAGGATATGATTAATGAAGTCGATGCTGACGGGAAT
GGTACCATTGACTTCCCGGAGTTCCTTAACTTGATGGCGCGCAAGATGAA
GGACACTGATTCAGAGGAGGAGTTAAAGGAGGCTTTTCGGGTTTTTGATA
AGGATCAGAATGGGTTCATTTCTGCTGCTGAACTCCGCCATGTGATGACA
AATCTTGGTGAGAAGTTGACTGATGAGGAAGTTGATGAGATGATTCGTGA
AGCTGATGTGGATGGTGATGGCCAGATCAATTATGAAGAGTTTGTTAAAG
TCATGATGGCCAAGTGAGAACCTCTCAACTATCACTTAAAAAAAAAATAA
TAAATAAATATCAAAATCAAAAGACTAAAAAATCAAAGTGAAGAGTGCAG
TTGTGACATCCTACATCGATCTAAAGAGGTCTTGGCTTGTTTAATATCCT
GTGAGCTCCTTGACTTGTGGTTGTGTTTAGGGTTGCAAGTCATCAAAT
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