FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 66/209 (31.58%), Postives = 95/209 (45.45%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 68/212 (32.08%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKD---GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M                GH  ++ G+  +    L+       MG+ AE+    H I+R+ QD +  RS      A   G F  EI P+E
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 68/212 (32.08%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKD---GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M                GH  ++ G+  +    L+       MG+ AE+    H I+R+ QD +  RS      A   G F  EI P+E
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 68/212 (32.08%), Postives = 99/212 (46.70%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKD---GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+IQ G  D+ V GG+E M                GH  ++ G+  +    L+       MG+ AE+    H I+R+ QD +  RS      A   G F  EI P+E
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAETMSAHLISKLLERNPKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIQTGNGDVFVIGGVEHM----------------GHVGMMHGVDPNPHLSLYAAKASGMMGLTAEMLGKMHGISREAQDKFGARSHQLAWKATQEGKFKDEIIPME 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 69/202 (34.16%), Postives = 98/202 (48.51%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            V IV   RTPMG   G +   V A  L +  +   L R  +V P  + ++++G V      G   AR AAL A IP+SV  TT+N++C S M+A+  AA++I +G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD +A RS  R  AA  +G FA EI  V
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLSRNPSVDPATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPATTVNRLCGSSMQALHDAARAIMVGDARTCLIGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDRFAARSHQRAAAATQAGHFAAEIVAV 192          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 64/203 (31.53%), Postives = 98/203 (48.28%), Query Frame = 2
Query:   74 DVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            DV IV   RT +     GS       +L +  +   +++ NV P  V ++  G V      +A   R AA  AG P +V   T+N+ CSSG++AV   A +I+ G  DI +  G+ESM+  P+      KGS       V+  +K           MG+ +E  A++  ++R+EQD  A+ S  +  +A  SG F  EI PV+
Sbjct:   43 DVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPR----GWKGS-------VNPNVKKFEQAHNCLLPMGITSENVAHRFNVSREEQDQAAVDSHRKAASATASGKFKDEITPVK 234          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 65/205 (31.71%), Postives = 95/205 (46.34%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++  + R   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G  D  + GG+E M + P                   GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALMVRNPQLDPNDIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDALHQAARAIMTGQGDTFIIGGVEHMGHVPMNHGVDFHPGLANRVAKASGM-------------MGLTAEMLGKMHGITREQQDAFAVRSHQRAHAATIEGRFAKEIWGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 67/201 (33.33%), Postives = 96/201 (47.76%), Query Frame = 2
Query:   83 IVGVARTPMGGFLGSL-SSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            IV   RTPMG   G +  +  A  L +  ++  L R   V P  + ++++G V      G   AR AAL AGIP+SV   T+N++C S M+A+  AA++I  G  D  + GG+E M + P           + H       L   +        MG+ AE  A  H I+R++QD +A RS  R  AA   G F  EI  +E
Sbjct:    6 IVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVP-----------MTHGNDFHPGLATSIAQAAG--SMGLTAEYLATLHGISREQQDEFAYRSHQRAQAATVEGRFRREILAME 193          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_PSEP11.999e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEAE1.999e-1532.083-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB1.999e-1532.083-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA71.999e-1532.083-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEPU2.611e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
FADA_PSEOL2.611e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_ERWT92.611e-1534.163-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
THIK1_ARATH3.410e-1531.533-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
FADA_SHEFN3.410e-1531.713-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_PSEHT3.410e-1533.333-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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