FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 65/209 (31.10%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + + P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 68/221 (30.77%), Postives = 104/221 (47.06%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPL-----LVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL-------AEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSG 688
            +  DV IV   R+ +G GF G+   V+   L    +   + R   +PL     L++EV  GNV +   G    R A L +GIP S     +N+ CSSG+ AV   A  I++G  DI +A G+ESM+N  K +       +E  + +R     ++                MG+  E  A    I+R +QD +A  S+ +   A+N GLF  EI P+++  G
Sbjct:   32 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFP-EPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP---------------MGITNENVAANFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDG 236          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+   DV IV   RTP+     G+        L +  +   +++ N+ P  V ++  G V +    +A   R AA  AG P +V   T+N+ CSSG++AV   A +I+ G  DI +  G+ESM+  P     A +GS       V+  +K           MGV +E  A +  ++R EQD  A+ S  +  AA  +G F  EI PV+
Sbjct:   46 SLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPM----AWEGS-------VNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVK 242          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_VIBVU (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fadA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++V IV   RTPMG   G +     A  L +  ++  L R   V P  ++++++G V      G   AR AAL AG+P  +   T+N++C S M+A+   A++I  G  +I + GG+E M + P             H     GM             MG+ AE+    H I+R++QD +A RS  R  AA   G F  EI P E
Sbjct:    2 KNVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHMGHVPMNHGVDFHPGMSKHVAKAAGM-------------MGLTAEMLGKLHGISREQQDEFAARSHARAHAATMEGRFKNEILPTE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_VIBVY (3-ketoacyl-CoA thiolase OS=Vibrio vulnificus (strain YJ016) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++V IV   RTPMG   G +     A  L +  ++  L R   V P  ++++++G V      G   AR AAL AG+P  +   T+N++C S M+A+   A++I  G  +I + GG+E M + P             H     GM             MG+ AE+    H I+R++QD +A RS  R  AA   G F  EI P E
Sbjct:    2 KNVVIVDCLRTPMGRSKGGAFRHTRAEDLSAHLMKGILARNPQVNPSEIEDIYWGCVQQTLEQGFNVARNAALLAGLPIEIGAVTVNRLCGSSMQALHDGARAIMTGDAEICLIGGVEHMGHVPMNHGVDFHPGMSKHVAKAAGM-------------MGLTAEMLGKLHGISREQQDEFAARSHARAHAATLEGRFKNEILPTE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 62/209 (29.67%), Postives = 94/209 (44.98%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV ++   R+PMG    G   +V A  L +  I+    R + V P  V+++ +G V      G   ARQ +L   IP++    T+N++C S M A+  AAQ+I  G  D+ V GG+E M + P         +   +      M             MG+ AE+ A  H I+R +QD +  RS      A   G F  EI  ++
Sbjct:    2 SLNPRDVVVIDCVRSPMGRAKAGCFRNVRAETLSATLIDALFDRNDKVDPAEVEDLIWGCVNQTLEQGFNVARQISLLTRIPHTSSAQTVNRLCGSAMSAIHTAAQAIMTGNGDVFVVGGVEHMGHVPMTQGFDHNPAASKYSAKASNM-------------MGLTAEMLAKMHGISRQQQDEFGARSHRLAHEATLEGRFRNEIISIQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 67/201 (33.33%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKRANVKPLL-VQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +   V A  L +  +   L R        + ++++G V  A   G   AR AAL A IP SV  TT+N++C S M+A+  AA++I +G  ++ + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD +A RS  R   A  SG F  EI P
Sbjct:    4 VVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNTALDAREIDDIYWGCVQQALEQGFNVARNAALLAEIPVSVPATTVNRLCGSSMQALHDAARAIMVGDANVCLIGGVEHMGHVP-----------MNHGVDFHPGLSRTIAKAAG--MMGLTAEMLARMHNISREMQDQFAARSHQRAYHATQSGAFRHEIVP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PHOLL (3-ketoacyl-CoA thiolase OS=Photorhabdus luminescens subsp. laumondii GN=fadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 67/203 (33.00%), Postives = 101/203 (49.75%), Query Frame = 2
Query:   74 DVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            +V I+   RTPMG   G +   V A  L +  ++   KR   ++   + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+   A+ I  G  ++ + GG+E M + P           + H   VD   K  L        MG+ AE+ A  H I+R+ QD +A+RS  R   A  SG FA EI+P+
Sbjct:    3 NVVIIDGIRTPMGRSKGGAFRQVRAEDLSAHLMKKLFKRNPAIQQHEIDDIYWGCVQQTLEQGFNIARNAALLADIPHSVPAVTVNRLCGSSMQALHDGARMIMTGEANVTLIGGVEHMGHVP-----------MTHG--VDFHPKMSLSVAKAAGVMGLTAEMLAKIHHISREMQDEFALRSHQRATQATQSGAFANEISPI 192          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 66/201 (32.84%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +   V A  L +  +   L R A +    + ++++G V      G   AR AAL A IP +V  TT+N++C S M+A+  AA++I +G  D+ + GG+E M + P           + H       L   +        MG+ AE+    H I+R+ QD +A RS  R   A  SG F  EI P
Sbjct:    4 VVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNAALDAREIDDIYWGCVQQTLEQGFNVARNAALLAEIPMNVPATTVNRLCGSSMQALHDAARTIMVGDADVCLIGGVEHMGHVP-----------MNHGVDFHPGLSRTIAKAAG--MMGLTAEMLGRMHNISREMQDQFAARSHQRAHHATQSGAFRHEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 63/208 (30.29%), Postives = 97/208 (46.63%), Query Frame = 2
Query:   62 IKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   DV I+   R+PMG    G   +V A  L +  ++   KR  NV    V+++ +G V      G   AR  +L AG+P +    T+N++C S M A+  AAQ+I  G  D+ V GG+E M +             + H   V+  L   +        MGV AE+    H ++R++QD++A+RS      A   G F  EI  +E
Sbjct:    3 LNPNDVVIIDAVRSPMGKTKNGVFRNVRAENLSAALVKELFKRNPNVDQKDVEDLIWGCVNQTLEQGFNMARAVSLLAGLPITCAAQTVNRLCGSSMSAIHTAAQAIMTGQGDVFVVGGVEHMGHV-----------GMMHGVDVNPALSKHM--AKASMMMGVTAEMLGKMHGVSREDQDAFAVRSHRLAHEATLQGRFNNEIVSIE 197          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_PSEE43.410e-1531.103-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
THIK_YEAST4.453e-1530.773-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
THIK2_ARATH4.453e-1531.253-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
FADA_VIBVU4.453e-1531.713-ketoacyl-CoA thiolase OS=Vibrio vulnificus GN=fa... [more]
FADA_VIBVY5.816e-1531.713-ketoacyl-CoA thiolase OS=Vibrio vulnificus (stra... [more]
FADA_HAHCH5.816e-1529.673-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]
FADA_ERWCT5.816e-1533.333-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADA_PHOLL9.921e-1533.003-ketoacyl-CoA thiolase OS=Photorhabdus luminescen... [more]
FADA_PECCP1.692e-1432.843-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_MARMS1.692e-1430.293-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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