FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: YHFS_BACSU (Putative acetyl-CoA C-acetyltransferase yhfS OS=Bacillus subtilis GN=yhfS PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 63/194 (32.47%), Postives = 87/194 (44.85%), Query Frame = 2
Query:   83 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            IV   RT  G   G L       L +  I C  ++   +   V EV  GN  +   G   AR +AL AG+P SV   TI++ C SG++AV  A   IQ G   + +AGG ES S +P +   AR                    D   D  MG+ AE  A +++I+R  QD YA+ S  R   A + G +  E+
Sbjct:    5 IVDAKRTIFGNQNGLLKPFLPEDLAAPIIRCLSRKLEDQ---VDEVILGN--ATGRGGNLARLSALQAGLPLSVPGMTIDRQCGSGLEAVRYACSLIQAGAGTMYIAGGSESSSQSP-FSERARFSP-----------------DAIGDPDMGIAAEYTAARYSISRSMQDEYALLSHQRSRNAHDEGFYREEV 175          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R  ++    + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+  AA+ I  G   + + GG+E M + P           + H       L   +        MG+ AE+ +  H I+R+ QD +A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R  ++    + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+  AA+ I  G   + + GG+E M + P           + H       L   +        MG+ AE+ +  H I+R+ QD +A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R  ++    + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+  AA+ I  G   + + GG+E M + P           + H       L   +        MG+ AE+ +  H I+R+ QD +A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +   V A  L +  +   L R   ++   + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+  AA+ I  G   + + GG+E M + P           + H       L   +        MG+ AE+ +  H I+R+ QD++A RS  R  AA  +G F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRQVRAEDLSAHLMRSLLSRNPQLEASAIDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDASVCLVGGVEHMGHVP-----------MNHGVDFHPGLSRNVAKAAG--MMGLTAEMLSRMHGISREMQDAFAARSHQRAWAATQAGHFKQEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 64/202 (31.68%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   74 DVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            +V IV   RTPMG   G +   V A  L +  +   L R  ++    + ++++G V      G   AR A+L A IP+SV   T+N++C S M+A+  AA++I +G   + + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R  QD +A RS  R  AA  +G F  EI P
Sbjct:    3 NVVIVDAVRTPMGRSKGGAFRQVRAEDLSAHLMRAVLSRNPSLDAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARAIMVGDAHVSLIGGVEHMGHVP-----------MNHGVDFHPGLSRSVAKAAG--MMGLTAEMLAKMHNISRQMQDEFAARSHQRAHAATLAGYFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.433e-13
Identity = 67/203 (33.00%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDT-IVDGMLKDGLWDVYNDFG-MGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   + P  + ++++G +      G   AR A+L A IP+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H      GM +    +V    G MG+ AE+ +  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALDPAALDDIYWGCLHQTLEQGFNLARNASLLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVHFHPGMSR----NVAKAAGMMGLTAEMLSRLHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
YHFS_BACSU6.431e-1432.47Putative acetyl-CoA C-acetyltransferase yhfS OS=Ba... [more]
FADA_SALTY8.399e-1432.343-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI8.399e-1432.343-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADA_SALPA8.399e-1432.343-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADA_ENTS81.097e-1331.843-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_SERP51.433e-1331.683-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_ENTCL1.433e-1333.003-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]
FADA_SHIBS1.871e-1332.343-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_ESCF31.871e-1332.343-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECOL61.871e-1332.343-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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