FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 64/200 (32.00%), Postives = 95/200 (47.50%), Query Frame = 2
Query:   74 DVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            +V I+   RTPMG   G +   V A  L +  +   + R   +    + ++++G V      G   AR A+L A IP+SV   T+N++C S M+A+   A++I +G   I + GG+E M + P           + H   VD     G         MG+ AE+ A  H I+R  QD +A RS  R  AA  +G FA EI
Sbjct:    3 NVVIIDAVRTPMGRSKGGAFRHVRAEDLSAHLMRAVISRNPGLNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAKISLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAFRSHQRAYAATQAGHFAKEI 189          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQAGLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_COLP3 (3-ketoacyl-CoA thiolase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=fadA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 62/204 (30.39%), Postives = 98/204 (48.04%), Query Frame = 2
Query:   74 DVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSAN-LGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +V IV   RTPMG    G   +V A  L +  ++  L R   + P  +++V +G V      G   AR A+L AG+P S+   T+N++C S M+A+  A+ SI  G  D+ + GG+E M + P           + +D   D  L   +        MG+ AE+   +H ITR+ QD++  RS  +   A  +G +  EI   +
Sbjct:    3 EVVIVDCIRTPMGRSKAGVFRNVRAEALSAHLMKQILVRNPALNPEDIEDVIWGCVKQTKEQGFNIARNASLLAGLPKSIGGVTVNRLCGSSMEALHQASTSIMSGQGDVFLIGGVEHMGHVP-----------MMYDVDFDPALNKNI--ALASGNMGLTAELLGKQHGITREMQDAFGARSHQKAHEAHLAGRWDNEIVATQ 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +  A  L +  +   L R  ++    + ++++G V      G   AR AAL A IP+SV   T+N++C S M+A+  AA+ I  G   + + GG+E M + P           + H       L   +        MG+ AE+ +  H I+R+ QD +A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNERAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLSRLHGISREMQDQFAARSHARAWAATQSGAFKTEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 58/212 (27.36%), Postives = 88/212 (41.51%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            + IV   RTP      +   + A  LG  A+   L R  + P L++++ FG V         AR+  LG G+       ++++ C++  +A+   A+SI  G   I +AGG +S S  P        + L +  K   L     +   LK          + +      MG  AE  A  H ITR+EQD+ A RS      A   GL   E+
Sbjct:   15 IAIVNGLRTPFAKQATAYHGIPAVDLGKTAVSELLARTGIDPALIEQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAIANVAESIMAGSISIGIAGGADSSSVLPIGVSKALARTLVDVNKARTLSQRLKLFSRLKFRDLMPVPPAVAEYSTGLRMGDTAEQMAKSHGITREEQDALAHRSHQLAAKAWEQGLLHDEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+  E+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTTEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 59/207 (28.50%), Postives = 89/207 (43.00%), Query Frame = 2
Query:   62 IKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +  +DV IV   R+ MG    G    V A  + +  +   ++R +  P  V+++ +G V      G    R   L AGIP +    TIN++C S M+A+  AA  I  G  D+ + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  +E
Sbjct:    4 LSPKDVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHMGHVGMMHGVDLNPEASKHYAKASNM-------------MGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGIE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 59/222 (26.58%), Postives = 95/222 (42.79%), Query Frame = 2
Query:   47 EPSESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA-----------RKGSRLGHDTIVD-GMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            +P  + +   + +V   RTP      + S+  A  LG +A++  + + ++ P L+ +V FG V         AR+  LG G+       ++ + C++  +      +SI  G  DI +AGG +S S  P    K LA             +K S L   ++ D   +   + +      MG  AE  A  H ITR+EQD+ A RS      A   GL   E+
Sbjct:   11 QPLTTRQGDRIAVVSGIRTPFAKQSTAFSTTPAVDLGKLAVKALMDKTDIDPKLIDQVVFGQVVQMPEAPNIAREIVLGTGMNIGTDAYSVTRACATSFQTTANVVESIMAGTIDIGIAGGADSSSVLPIGVSKKLASTLLALSKTKTVYQKLSLLRTLSLKDIAPVPPAVAEYSTGISMGQTAEQMAKSHGITREEQDALAHRSHTLAAKAWKDGLIQDEV 232          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  S  F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  S  F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIP 191          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_YERP33.192e-1332.003-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_SHISS3.192e-1332.343-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_COLP33.192e-1330.393-ketoacyl-CoA thiolase OS=Colwellia psychrerythra... [more]
FADA_SALCH4.168e-1331.843-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADI_SERP55.444e-1327.363-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]
FADA_ECOUT5.444e-1331.843-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_PSYCK7.110e-1328.503-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADI_VIBF19.286e-1326.583-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SHIDS9.286e-1331.843-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_ECOLI9.286e-1331.843-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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