FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPMG   G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  S  F  EI P
Sbjct:    4 VVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSAAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 63/200 (31.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:   74 DVCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            +V I+   RTPMG   G +   V A  L +  +   L R   +    + ++++G V      G   AR A+L A IP+SV   T+N++C S M+A+   A++I +G   + + GG+E M + P           + H   VD     G         MG+ AE+ A  H I+R  QD +A+RS  R  AA  +  FA EI
Sbjct:    3 NVVIIDAVRTPMGRSKGGAFRQVRAEDLSAHLMREVLSRNPELNAAEIDDIYWGCVQQTLEQGFNIARNASLLAEIPHSVPAVTVNRLCGSSMQALHDGARAIMVGDAQVSLIGGVEHMGHVP-----------MNHG--VDFHPGMGRTVAKAAGMMGLTAEMLAKIHNISRQSQDEFAVRSHQRAYAATQADHFAKEI 189          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 58/207 (28.02%), Postives = 89/207 (43.00%), Query Frame = 2
Query:   62 IKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +  +DV IV   R+ MG    G    V A  + +  +   ++R +  P  V+++ +G V      G    R   L AGIP +    T+N++C S M+A+  AA  I  G  D+ + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  +E
Sbjct:    4 LSPKDVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNNITREEQDAFGLESHRRAWAATTEGRFDNEIIGIE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 64/201 (31.84%), Postives = 94/201 (46.77%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAP 670
            V IV   RTPM    G +  +V A  L +  +   L R   ++   + ++++G V      G   AR AAL A +P+SV   T+N++C S M+A+  AA+ I  G     + GG+E M + P           + H       L   +        MG+ AE+ A  H I+R+ QD++A RS  R  AA  SG F  EI P
Sbjct:    4 VVIVDAIRTPMSRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMSGDAQACLVGGVEHMGHVP-----------MSHGVDFHPGLSRNVAKAAG--MMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIP 191          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 60/234 (25.64%), Postives = 96/234 (41.03%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI---------APVEMSSGRRKPS 703
            + +V   RTP      +   V A  LG + +   L R ++ P L+ ++ FG V         AR+  LG G+  S    ++++ C++  +AV    +SI  G  DI +AGG +S S  P        + L +  K   L     +   L+          + +      MG  AE  A  H I+R+ QD+ A RS      A   G  + E+         AP+E  +  R+ S
Sbjct:   15 IAVVAGLRTPFAKQATAFHGVPAVDLGKLVVSEMLARTDLDPKLIDQLVFGQVVQMPEAPNIAREIVLGTGMSVSTDAYSVSRACATSFQAVANVTESIMAGTVDIAIAGGADSSSVLPIGVSKKLARALVDLNKARNLQQRFNILRQLRVKDLLPVPPAVAEYSTGLSMGQTAEQMAKSHQISREAQDALAHRSHTLAAQAWADGKLSGEVFTAHVPPYKAPLERDNNIRESS 248          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 60/208 (28.85%), Postives = 88/208 (42.31%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++  RDV IV   R+ MG    G   +V A  L +  +   + R       V+++ +G V      G    R   L AG+P +V   T+N++C S M+A+  AA  I     DI + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  VE
Sbjct:    3 TLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNGITREEQDTFGVESHRRAWAATQEGRFKNEIIGVE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 61/226 (26.99%), Postives = 97/226 (42.92%), Query Frame = 2
Query:   35 MVPLEPSESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP-----------KYLAEARKGSR----LGHDTIVDGM-LKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            M  L+   + +   + +V   RTP      + + V A  +G + +   L+  +  P L+++V FG V         AR+  LG G+       ++ + C++  +A    A+SI  G  DI +AGG +S S  P             L++AR  S+    L   ++ D M +   + +      MG  AE  A  H ITR EQD+ A RS      A   GL   E+
Sbjct:    1 MTRLQNLTTRQGERIAVVSGLRTPFARQATAFNGVPALDMGKMVVNEMLQELDFDPKLIEQVVFGQVVQMPEAPNIAREIVLGTGMHIGTDAYSVTRACATSFQAAANVAESIISGTIDIGIAGGADSSSVLPIGVSKKLAATLLALSKARTMSKRLKLLSTLSVKDLMPVPPAVAEYSTGISMGQTAEQMAKSHGITRQEQDALAYRSHTLAAKAWKDGLIRGEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 60/208 (28.85%), Postives = 88/208 (42.31%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++  RDV IV   R+ MG    G   +V A  L +  +   + R       V+++ +G V      G    R   L AG+P +V   T+N++C S M+A+  AA  I     DI + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  VE
Sbjct:    3 TLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIGVE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 60/208 (28.85%), Postives = 88/208 (42.31%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++  RDV IV   R+ MG    G   +V A  L +  +   + R       V+++ +G V      G    R   L AG+P +V   T+N++C S M+A+  AA  I     DI + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  VE
Sbjct:    3 TLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIGVE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 60/208 (28.85%), Postives = 88/208 (42.31%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++  RDV IV   R+ MG    G   +V A  L +  +   + R       V+++ +G V      G    R   L AG+P +V   T+N++C S M+A+  AA  I     DI + GG+E M +               H      M             MG+ AE+    + ITR+EQD++ + S  R  AA   G F  EI  VE
Sbjct:    3 TLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNGITREEQDAFGVESHRRAWAATQEGRFKNEIIGVE 197          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_ECOHS9.286e-1331.843-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]
FADA_YERE81.213e-1231.503-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADA_PSYA21.213e-1228.023-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
FADA_ECO241.213e-1231.843-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
FADI_AERHH1.584e-1225.643-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_ACIBT1.584e-1228.853-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADI_PHOPR2.069e-1226.993-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_ACIBY2.069e-1228.853-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS2.069e-1228.853-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC2.069e-1228.853-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
back to top