FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 56/212 (26.42%), Postives = 90/212 (42.45%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGH--DTIVDGMLKD------GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            + +V   RTP      +   V A  LG + +   L R ++ P L+ ++ FG V         AR+  LG G+  +    ++++ C++  +AV    +SI  G  DI +AGG +S S  P        + L +  K   L    + +    LKD       + +      MG  AE  A  H I+R+ QD+ A RS      A   G  + E+
Sbjct:   15 IAVVAGLRTPFAKQATAFHGVPAVDLGKLVVSELLARTSLDPKLIDQLVFGQVVQMPEAPNIAREIVLGTGMSVTTDAYSVSRACATSFQAVANVTESIMAGTVDIAIAGGADSSSVLPIGVSKKLARALVDLNKARNLQQRFNILRALRLKDLMPVPPAVAEYSTGLSMGQTAEQMAKSHQISREAQDALAHRSHTLAAQAWADGKLSGEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERE8 (3-ketoacyl-CoA thiolase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 57/212 (26.89%), Postives = 88/212 (41.51%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            + IV   RTP      +   V A  LG I +   L R+ V P L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G   + +AGG +S S  P        + L +  K   L     +   LK          + +      MG  AE  A  + I+R +QD+ A+RS      A   GL   E+
Sbjct:   15 IAIVSGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGVAPELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVTVAIAGGADSSSVLPIGVSKALARTLVDVNKARTLSQRLKLFSRLKLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISRQDQDALALRSHQMAAQAWQQGLLHDEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEPA (3-ketoacyl-CoA thiolase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=fadI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 60/214 (28.04%), Postives = 93/214 (43.46%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGMLKDGLWDVY----------NDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            + IV   RTP      +   VSA  +G + +   L R+ + P  ++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  DI +AGG +S S  P    K LA A     K   LG    +   L  GL D+               MG  AE  A  + I+R +QD+ A RS        N+G  A E+
Sbjct:   15 IAIVSGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKEIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSTVNVAESIMTGNLDIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSLGQRLSIFRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNAGKLAEEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEWM (3-ketoacyl-CoA thiolase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=fadI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 58/218 (26.61%), Postives = 91/218 (41.74%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLKDGLWDVY----------NDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            K   + IV   RTP      +   VSA  +G + +   L R+ + P  +Q++ +G V         AR+  LG G+  +    ++ + C++  ++ +  A+SI  G  DI +AGG +S S  P          L +  K    G    +   L  GL D+               MG  AE  A  + I+R +QD+ A RS        NSG  A E+
Sbjct:   11 KGDRIAIVTGLRTPFAKQATAFHGVSALDMGKMVVNELLSRSELDPKEIQQLVYGQVVQMPAAPNIAREIVLGTGMDIATDAYSVTRACATSFQSTVNVAESIMTGNIDIGIAGGSDSSSVLPIGVSKKLAHGLVDLNKARSFGQKLAIFRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHSLATETWNSGNLAQEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEPW (3-ketoacyl-CoA thiolase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 58/214 (27.10%), Postives = 93/214 (43.46%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGMLKDGLWDVY----------NDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            + IV   RTP      +   VSA  +G + +   + R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K    G    +   L  GL D+               MG  AE  A  + I+R +QD+ A RS        N+G  A E+
Sbjct:   15 IAIVSGLRTPFAKQATAFHGVSALDMGKMVVNELISRSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMDISTDAYSVTRACATSFQSTVNVAESILTGNMEIGIAGGSDSSSVLPIGVSKKLAHALVDLNKARSFGQKLSIFRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNAGKLAEEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 58/215 (26.98%), Postives = 95/215 (44.19%), Query Frame = 2
Query:   56 ESIKARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGMLKDGLWDVY----------NDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSG 646
            ++ +   + IV   RTP      +   VSA  +G + +   + R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K   LG    +  M + GL D+               MG  AE  A  + I+R +QD+ A RS        NSG
Sbjct:    8 KNARGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELISRSELDPKLIEQLVYGQVVLMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNVEIGIAGGADSSSVLPITVSKKLAHALVDLNKARTLGQKFAI--MRRLGLKDLMPVPPAVAEYSTGLSMGQTAEQMAKTYGISRADQDALAHRSHTLATETWNSG 220          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 58/212 (27.36%), Postives = 89/212 (41.98%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHD-TIVDGMLKDGLWDV-------YNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            +  V   RTP      +   V A +LG +     L R  + P L++ + FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  ++ +AGG +S S  P        + L +  K   LG    ++ G+    L  V            MG  AE  A  + ITR+EQD  A RS      A  SG+   E+
Sbjct:   15 IAFVSGLRTPFARQATAYHGVPALELGKLVTSELLVRTGIDPELIELLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIMAGTVEVGIAGGADSSSVLPIGVSKALARTLVDMNKARTLGQKLKLLSGLRPKDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 58/212 (27.36%), Postives = 89/212 (41.98%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHD-TIVDGMLKDGLWDV-------YNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            +  V   RTP      +   V A +LG +     L R  + P L++ + FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  ++ +AGG +S S  P        + L +  K   LG    ++ G+    L  V            MG  AE  A  + ITR+EQD  A RS      A  SG+   E+
Sbjct:   15 IAFVSGLRTPFARQATAYHGVPAIELGKLVTSELLVRTGIDPELIELLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIMAGTVEVGIAGGADSSSVLPIGVSKALARTLVDMNKARTLGQKLRLLSGLRPKDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGITREEQDELAHRSHKLAAQAWESGVLRDEV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPY (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPS (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADI_AERS46.019e-1226.423-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
FADI_YERE81.027e-1126.893-ketoacyl-CoA thiolase OS=Yersinia enterocolitica... [more]
FADI_SHEPA1.027e-1128.043-ketoacyl-CoA thiolase OS=Shewanella pealeana (st... [more]
FADI_SHEWM1.341e-1126.613-ketoacyl-CoA thiolase OS=Shewanella woodyi (stra... [more]
FADI_SHEPW1.341e-1127.103-ketoacyl-CoA thiolase OS=Shewanella piezotoleran... [more]
FADI_SHEDO1.341e-1126.983-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADI_PECCP1.751e-1127.363-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADI_ERWCT1.751e-1127.363-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
FADI_YERPY2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_YERPS2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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