FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPP (3-ketoacyl-CoA thiolase OS=Yersinia pestis (strain Pestoides F) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPN (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPG (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPE (3-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPB (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 53/195 (27.18%), Postives = 85/195 (43.59%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            + IV   RTP      +   V A  LG I +   L R+ +   L+ ++ FG V         AR+  LG G+       ++++ C++  +AV   A+SI  G  DI +AGG +S S  P        + L +A K   L     +   L+          + +      MG  AE  A  + I+R++QD+ A+RS
Sbjct:   15 IVIVNGLRTPFAKQATAYHGVPAVDLGKIVVSELLARSGISSELIDQLVFGQVVQMPEAPNIAREIVLGTGMSVHTDAYSVSRACATSFQAVANVAESIIAGSVDIAIAGGADSSSVLPIGVSKALARTLVDANKARSLSQKLKLFSRLRLRDLLPVAPAVAEYSTGLRMGDTAEQMAKTYGISREDQDALALRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadI PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 56/195 (28.72%), Postives = 87/195 (44.62%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA-----------RKGSRLGHDTIVDGM-LKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            V IV   RTP          V A  LG + ++  + R  + P L+++V FG V         AR+  LG G+  +    ++ + C++  +A +  A+SI  G  DI +AGG +S S  P    K LA +           +K   L + +  D M +   + +      MG  AE  A  + I+R EQD+ A RS
Sbjct:   14 VAIVAGLRTPFARQSTEFGQVPAVDLGKMVVQEMMARTAIDPKLIEQVVFGQVVQMPEAPNIAREIVLGTGMSINTDAYSVTRACATSFQAAVNVAESIMAGSIDIGIAGGADSSSVLPIGVSKKLAASLLALSKTKTVGQKLKLLSNLSFKDLMPVPPAVAEYSTGLSMGQTAEQMAKSYAISRAEQDALAHRS 208          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadI PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 56/195 (28.72%), Postives = 87/195 (44.62%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA-----------RKGSRLGHDTIVDGM-LKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            V IV   RTP          V A  LG + ++  + R  + P L+++V FG V         AR+  LG G+  +    ++ + C++  +A +  A+SI  G  DI +AGG +S S  P    K LA +           +K   L + +  D M +   + +      MG  AE  A  + I+R EQD+ A RS
Sbjct:   14 VAIVAGLRTPFARQSTEFGQVPAVDLGKMVVQEMMARTAIDPKLIEQVVFGQVVQMPEAPNIAREIVLGTGMSINTDAYSVTRACATSFQAAVNVAESIMAGSIDIGIAGGADSSSVLPIGVSKKLAASLLALSKTKTVGQKLKLLSNLSFKDLMPVPPAVAEYSTGLSMGQTAEQMAKSYAISRAEQDALAHRS 208          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 57/201 (28.36%), Postives = 88/201 (43.78%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGMLKDGLWDVY----------NDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            K   + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  DI +AGG +S S  P    K LA A     K    G    +   L  GL D+               MG  AE  A  + I+R +QD+ A RS
Sbjct:   11 KGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSTVNVAESIMTGNIDIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRL--GLKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRS 209          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADI_YERPP2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pestis (strain... [more]
FADI_YERPN2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERPG2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERPE2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pestis GN=fadI... [more]
FADI_YERPB2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_YERPA2.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADI_YERP32.287e-1127.183-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADI_VIBCH2.287e-1128.723-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadI... [more]
FADI_VIBC32.287e-1128.723-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADI_SHESW2.287e-1128.363-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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