FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2973 contig Ccv1_Contig2973:92..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ACIAD (3-ketoacyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 58/208 (27.88%), Postives = 86/208 (41.35%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++  RDV IV   R+ MG    G   +V A  L +  +   + R       V+++ +G V      G    R   L A +P +V   T+N++C S M+A+  AA  I     DI + GG+E M +               H      M             MG+ AE+    + I R+EQD++ + S  R  AA   G F  EI  VE
Sbjct:    3 NLNPRDVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIVLLADLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHMGHVGMMHGIDLNPEASKHYAKASNM-------------MGLTAEMLGRMNGIGREEQDAFGVESHRRAWAATQEGRFKNEIVGVE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: ECHB_MACFA (Trifunctional enzyme subunit beta, mitochondrial OS=Macaca fascicularis GN=HADHB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 58/211 (27.49%), Postives = 87/211 (41.23%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP--------KYLAEARKGSRLGHDTIVDGMLK--------DGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFA 655
            R+V +V   RTP      S   +    L   A+   L R +V   +V  + FG V         AR+AALGAG  +     T+   C S  +A+      I  G  D++VAGG+E MS+ P        K + +  K   +G    +    +          + +      MG  A+  A    ++R EQD YA+RS      AQ+ GL +
Sbjct:   53 RNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIFGTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAGGVELMSDIPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRLNFLAPELPAVAEFSTSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLS 263          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 55/208 (26.44%), Postives = 90/208 (43.27%), Query Frame = 2
Query:   77 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA--------------RKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSG 646
            + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A                  RLG   ++   +   + +      MG  AE  A  + I+R +QD+ A RS        NSG
Sbjct:   15 IAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLSRSEIDPQLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGLAGGSDSSSVLPIGVSKKLAHALVDLNKARTFKQKFAIARRLGLKDLMP--VPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRSHTLATETWNSG 220          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEB9 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS195) GN=fadI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 55/199 (27.64%), Postives = 88/199 (44.22%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGML--KD------GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            K   + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K    G    +   L  KD       + +      MG  AE  A  + I+R +QD+ A RS
Sbjct:   11 KGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 55/199 (27.64%), Postives = 88/199 (44.22%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGML--KD------GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            K   + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K    G    +   L  KD       + +      MG  AE  A  + I+R +QD+ A RS
Sbjct:   11 KGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 55/199 (27.64%), Postives = 88/199 (44.22%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGML--KD------GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            K   + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K    G    +   L  KD       + +      MG  AE  A  + I+R +QD+ A RS
Sbjct:   11 KGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADI_SHEB2 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS223) GN=fadI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 55/199 (27.64%), Postives = 88/199 (44.22%), Query Frame = 2
Query:   65 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAP----KYLAEA----RKGSRLGHDTIVDGML--KD------GLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRS 613
            K   + IV   RTP      +   VSA  +G + +   L R+ + P L++++ +G V         AR+  LG G+  S    ++ + C++  ++ +  A+SI  G  +I +AGG +S S  P    K LA A     K    G    +   L  KD       + +      MG  AE  A  + I+R +QD+ A RS
Sbjct:   11 KGERIAIVAGLRTPFAKQATAFHGVSALDMGKMVVNELLARSELDPKLIEQLVYGQVVQMPAAPNIAREIVLGTGMNVSTDAYSVTRACATSFQSAVNVAESIMTGNIEIGIAGGADSSSVLPIGVSKKLAHALVDLNKARSFGQKLQIFRRLGIKDLLPVPPAVAEYSTGLSMGQTAEQMAKTYNISRADQDALAHRS 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEA6 (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=fadA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 57/198 (28.79%), Postives = 92/198 (46.46%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSL-SSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSAN-LGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVD---GMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSG 646
            ++V +V   RTPMG   G +  +V A  L +  +   ++R  N+ P  ++++ +G V      G   AR A L   IP SV   T+N++C S M+A+  A   I  G  D+ + GG+E M + P              D  +D   G+ K           MG+ AE+   ++ I+R+ QD++  RS  +  AA   G
Sbjct:    2 KEVVVVDCIRTPMGRSKGGIFRNVRAETLSAHLMSKLIERNPNLDPNEIEDIIWGCVQQTKEQGFNIARNAQLLTDIPRSVAAVTVNRLCGSSMQALHDATSGIMSGRGDVYMIGGVEHMGHVPM-------------DFNIDFHPGIAKTA---ARASGSMGMTAELLGRQNGISREMQDAFGARSHQKAHAAAVEG 183          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_ACIAD6.655e-1127.883-ketoacyl-CoA thiolase OS=Acinetobacter sp. (stra... [more]
ECHB_MACFA6.655e-1127.49Trifunctional enzyme subunit beta, mitochondrial O... [more]
FADI_SHEFN8.691e-1126.443-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADI_SHEB98.691e-1127.643-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB88.691e-1127.643-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB58.691e-1127.643-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADI_SHEB28.691e-1127.643-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_PSEA68.691e-1128.793-ketoacyl-CoA thiolase OS=Pseudoalteromonas atlan... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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