FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIM_PONAB (3-ketoacyl-CoA thiolase, mitochondrial OS=Pongo abelii GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 75/210 (35.71%), Postives = 110/210 (52.38%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSGRRK 697
            R V +V   RTP G + G L   +AT L   A + AL    V P  V  V  GNV  ++      AR   L  GIP      TIN++C SG ++++   Q I +   ++V+ GG ESMS AP  +   R G++LG D  ++  L   L D +    + + AE  A KH I+R+E D YA++S  R  AA ++G F  E+AP+E+ + + K
Sbjct:    5 RGVFVVAAKRTPFGAYGGLLKDFTATDLSEFAAKAALSAGKVSPETVDSVIMGNVLQSSSDAIYLARHVGLRVGIPKETPALTINRLCGSGFQSIVNGCQEICVKEAEVVLCGGTESMSQAPYCVRTVRFGTKLGSDIKLEDSLWVSLTDQHVQLPIAMTAENLAVKHKISREECDKYALQSQQRWKAANDAGYFNDEMAPIEVKTKKGK 214          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 74/210 (35.24%), Postives = 109/210 (51.90%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSGRRK 697
            R V IV   RTP G + G L   SAT L   A   AL    V P  +  V  GNV  ++   A  AR   L  G+P      T+N++C SG ++++   Q I     ++V+ GG ESMS +P  +   R G++ G D  ++  L  GL D +    MG+ AE  A K+ I+R++ D YA++S  R  AA  +G F  E+AP+E+ + + K
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFSATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYCVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVKTKKGK 214          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.883e-27
Identity = 74/210 (35.24%), Postives = 108/210 (51.43%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSGRRK 697
            R V IV   RTP G + G L   + T +   A   AL    V P  V  V  GNV  ++      AR   L  GIP      TIN++C SG ++++   Q I    +++V+ GG ESMS AP  +   R G++LG +  ++  L  GL D +    M + AE  A KH I+R++ D YA++S  R   A ++G F  E+APVE+ + + K
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTPTDMAEFAARAALSAGRVSPETVDSVVVGNVMQSSSDAIYLARHVGLRVGIPKETPAITINRLCGSGFQSIVSGCQEICSRDSEVVLCGGTESMSQAPYCVRNIRFGTKLGSELKLEDTLWTGLTDTHVQMPMAITAENLAVKHQISREDCDRYALQSQQRWKTANDAGYFDNEMAPVEVKTRKGK 214          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIM_RAT (3-ketoacyl-CoA thiolase, mitochondrial OS=Rattus norvegicus GN=Acaa2 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.651e-27
Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSGRRK 697
            R V IV   RTP G + G L   +AT L   A   AL    V P  +  V  GNV  ++   A  AR   L  G+P      T+N++C SG ++++   Q I     ++V+ GG ESMS +P  +   R G++ G D  ++  L  GL D +    MG+ AE  A K+ I+R++ D YA++S  R  AA  +G F  E+AP+E+ + + K
Sbjct:    5 RGVFIVAAKRTPFGAYGGLLKDFTATDLTEFAARAALSAGKVPPETIDSVIVGNVMQSSSDAAYLARHVGLRVGVPTETGALTLNRLCGSGFQSIVSGCQEICSKDAEVVLCGGTESMSQSPYSVRNVRFGTKFGLDLKLEDTLWAGLTDQHVKLPMGMTAENLAAKYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVKTKKGK 214          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PCAF_PSEPU (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida GN=pcaF PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.402e-23
Identity = 74/210 (35.24%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALK-RANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG----SRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMS 682
            RDV I    RTP+G F G+L+ V A  L ++ ++  ++    V+   V EVFFG    A    +  AR A L AG+P S+   T+N++C+SGM A+  A ++I  G  ++ +AGG+ESMS AP  + +A  G     +L   TI    +   +   Y    M   A+  A+ + ++R +QD++A+RS  +  AAQ +G FA EI PV ++
Sbjct:    2 RDVFICDAIRTPIGRFGGALAGVRADDLAAVPLKALIEPNPAVQWDQVDEVFFGCANQAGEDNRNVARMALLLAGLPESIPGVTLNRLCASGMDAIGTAFRAIASGEMELAIAGGVESMSRAPFVMGKAESGYSRNMKLEDTTIGWRFINPLMKSQYGVDSMPETADNVADDYQVSRADQDAFALRSQQKAAAAQAAGFFAEEIVPVRIA 211          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PCAF_PSEAE (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aeruginosa GN=pcaF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.443e-23
Identity = 74/208 (35.58%), Postives = 116/208 (55.77%), Query Frame = 2
Query:   68 ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEA----RKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            +R+V I    RTP+G F GSLS+V A  L ++ ++  ++R   V    + EVF G    A    +  AR A L AG+P SV   T+N++C+SGM A+  A ++I  G  ++ +AGG+ESMS AP  + +A     +G ++   TI    +   + + Y    M   A+  A+ + ++R +QD++A+RS  R   AQ +G FA EI PV
Sbjct:    2 SREVFICDAVRTPIGRFGGSLSAVRADDLAAVPLKALVERNPGVDWSALDEVFLGCANQAGEDNRNVARMALLLAGLPESVPGVTLNRLCASGMDAIGTAFRAIACGEMELAIAGGVESMSRAPYVMGKADSAFGRGQKIEDTTIGWRFVNPLMKEQYGIDPMPQTADNVADDYRVSRADQDAFALRSQQRAGRAQEAGFFAEEIVPV 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLI (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (strain K12) GN=paaJ PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.880e-22
Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAI-ECALKRANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG-SRLGH--DTIVDGMLKDGLW-DVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSS 685
            R+  I    RTP+G + G+LSSV A  L +I + E  ++   +    + +V  G    A    +  AR A L AG+P SV  TTIN++C SG+ A+  AA++I+ G  D+++AGG+ESMS AP  + +A    SR     DT +     + L    +    M   AE  A    I+R++QDS+A+RS  R   AQ+SG+ A EI PV + +
Sbjct:    2 REAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKN 212          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PAAJ_ECOLX (Beta-ketoadipyl-CoA thiolase OS=Escherichia coli GN=paaJ PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22
Identity = 76/211 (36.02%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAI-ECALKRANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG-SRLGH--DTIVDGMLKDGLW-DVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSS 685
            R+  I    RTP+G + G+LS V A  L +I + E  ++   +    + +V  G    A    +  AR A L AG+P SV  TTIN++C SG+ A+  AA++I+ G  D+++AGG+ESMS AP  + +A    SR     DT +     + L    +    M   AE  A    I+R++QDS+A+RS  R   AQ+SG+ A EI PV + +
Sbjct:    2 REAFICDGIRTPIGRYGGALSGVRADDLAAIPLRELLVRNPRLDAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAARAIKAGDGDLLIAGGVESMSRAPFVMGKATSAFSRQAEMFDTTIGWRFVNPLMAQQFGTDSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKN 212          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PCAF_PSESB (Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (strain B13) GN=pcaF PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 73/208 (35.10%), Postives = 116/208 (55.77%), Query Frame = 2
Query:   68 ARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEA----RKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            +R+V I    RTP+G F GSL++V A  L ++ ++  ++R   V    + EV+ G    A    +  AR A L AG+P+SV   T+N++C+SGM AV  A ++I  G  ++V+AGG+ESMS AP  + +A     +G ++   TI    +   +   Y    M   A+  A+ + ++R +QD++A+RS      AQ +G FA EI PV
Sbjct:    2 SREVYICDAVRTPIGRFGGSLAAVRADDLAAVPVKALVERNPQVDWSQLDEVYLGCANQAGEDNRNVARMALLLAGLPDSVPGVTLNRLCASGMDAVGTAFRAIASGEAELVIAGGVESMSRAPYVMGKADSAFGRGQKIEDTTIGWRFINPLMKAQYGVDAMPETADNVADDYKVSRADQDAFALRSQQLAGRAQAAGYFAEEIVPV 209          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21
Identity = 71/212 (33.49%), Postives = 112/212 (52.83%), Query Frame = 2
Query:   83 IVGVARTPMGGFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSANL-GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEAR----KGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVEMSSGRRKP 700
            IV   RTP G + G L++V A  LG+I I   ++R  +V    V +V +G    A    +   R +AL AG+P  V  TT+N++C S + A+ +AA++I+ G   +++AGG+ESMS AP  + ++     +  ++   T+    +   L  +Y    M   AE  A +  I R++QD +A  S  R  AAQ  G FA EI PV +   + +P
Sbjct:    6 IVDAIRTPFGRYAGGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMSRAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQDQFAYTSQQRTAAAQAKGYFAKEIVPVTIPQRKGEP 217          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
THIM_PONAB1.743e-2735.713-ketoacyl-CoA thiolase, mitochondrial OS=Pongo ab... [more]
THIM_MOUSE3.883e-2735.243-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
THIM_BOVIN3.883e-2735.243-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
THIM_RAT8.651e-2734.763-ketoacyl-CoA thiolase, mitochondrial OS=Rattus n... [more]
PCAF_PSEPU3.402e-2335.24Beta-ketoadipyl-CoA thiolase OS=Pseudomonas putida... [more]
PCAF_PSEAE4.443e-2335.58Beta-ketoadipyl-CoA thiolase OS=Pseudomonas aerugi... [more]
PAAJ_ECOLI2.880e-2236.49Beta-ketoadipyl-CoA thiolase OS=Escherichia coli (... [more]
PAAJ_ECOLX8.379e-2236.02Beta-ketoadipyl-CoA thiolase OS=Escherichia coli G... [more]
PCAF_PSESB1.094e-2135.10Beta-ketoadipyl-CoA thiolase OS=Pseudomonas sp. (s... [more]
PCAF_ACIAD1.094e-2133.49Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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