FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2973 contig Ccv1_Contig2973:92..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_CHRSD (3-ketoacyl-CoA thiolase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=fadA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 67/210 (31.90%), Postives = 103/210 (49.05%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSANLGQAP--ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RD+ +V   RT M     G+  +V A  L +  ++    R AN+ P  V +V +G V +  L Q+   AR AA+  GIP +V   T+N++C S M A+ +A  +I+ G+ D  + GG+E M + P           + H   VD       +       MG+ AE+    H + R+EQD++ +RS  R  AA  +G F  EI  VE
Sbjct:    2 SLNPRDIVVVDAVRTAMAKAKHGAFRNVRAENLSAAVMQALFDRNANLVPAEVDDVIWGCV-NQTLEQSMNIARNAAIMTGIPRTVPAQTVNRLCGSSMSALHIATANIKAGMGDFYIIGGVEHMEHVP-----------MTHG--VDVNPAASKYAAKAAMMMGLTAELLGKMHGVGREEQDAFGVRSHQRAQAANENGYFDNEIVGVE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 64/203 (31.53%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   68 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            A DV +V   RTP+G    G     +  +L S  +   L+   +KP  + ++  GNV     G   AR A   +GIP +V  + +N+ CSSG++AV   A  I+ G  DI +A G+ESMS     L+       +    +     +D L        MG+ +E  A +  I+R +QD++A+ S  +  +AQ+ G F  EI PV
Sbjct:   35 ASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS-----LSNRGNPGNISSRLLESDKARDCL------IPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHESW (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain W3-18-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 66/205 (32.20%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 66/205 (32.20%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 66/205 (32.20%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 63/203 (31.03%), Postives = 102/203 (50.25%), Query Frame = 2
Query:   68 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            A DV +V   RTP+G    G     +  +L S  +   L+   +KP  + ++  GNV     G   AR A   +GIP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESM+     L++      +    + +   +D L        MG+ +E  A +  ++R +QD++A+ S  +  +AQ+ G F  EI PV
Sbjct:   35 ASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMT-----LSQRGNHGNISSRLLENEKARDCL------IPMGITSENVAERFGVSRQKQDAFALASQQKAASAQSRGCFHAEIVPV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 65/203 (32.02%), Postives = 100/203 (49.26%), Query Frame = 2
Query:   68 ARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            A DV +V   RTP+G    G   + +  +L S  +   L+   +KP  + ++  GNV     G   AR A   +GIP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESMS     L+       +    +     +D L        MG+ +E  A +  I+R +QD +A+ S  +  +AQ+ G F  EI PV
Sbjct:   35 ASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMS-----LSGMGNPGNISSRLLESEKARDCLTP------MGMTSENVAERFGISRQKQDDFALASQQKAASAQSRGCFRAEIVPV 226          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 66/205 (32.20%), Postives = 97/205 (47.32%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P                   GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMSHGVDFHPGLANKVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATVEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAYAATIEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIE 193          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_CHRSD1.252e-1731.903-ketoacyl-CoA thiolase OS=Chromohalobacter salexi... [more]
THIKA_RAT3.643e-1731.533-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
FADA_SHESW3.643e-1732.203-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHEPC3.643e-1732.203-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB83.643e-1732.203-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
THIKB_MOUSE4.758e-1731.033-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_MOUSE6.214e-1732.023-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
FADA_SHEB56.214e-1732.203-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_SHEON8.116e-1731.713-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
FADA_SHESM1.384e-1631.713-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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