FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.384e-16
Identity = 65/205 (31.71%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGITREQQDAFAVRSHQRAHAATVEGRFAKEIYGIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHELP (3-ketoacyl-CoA thiolase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   ++ A  L +  ++  L R   + P  +++V +G V      G   AR AAL AGIP      T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H ITR +QD +A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNMRAESLSAELMKALLVRNPQLDPNTIEDVIWGCVQQTLEQGFNIARNAALLAGIPKQAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIVGGVEHMGHVPMNHGVDFHPGLATNVAKASGM-------------MGLTAEMLGKMHGITRQQQDEFAVRSHQRAHAATVEGRFANEIHAIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.808e-16
Identity = 66/205 (32.20%), Postives = 97/205 (47.32%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++  L R   + P L+++V +G V      G   AR A+L AGIP +    T+N++C S M A+  AA++I  G+ D  + GG+E M + P                   GM             MG+ AE+    H I+R++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKALLIRNPQLDPSLIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMDAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANRVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAVRSHQRAHAATVEGRFAKEIWAME 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THL_CLODI (Acetyl-CoA acetyltransferase (Fragment) OS=Clostridium difficile GN=thi PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKA 349
            R+V I   ART +G F G+  SVSA +LG  A + A+KRAN+ P ++ E   G V +A LGQ  ARQ ALGAGIP      TIN VC SG+++
Sbjct:    2 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCGSGLRS 94          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.361e-16
Identity = 68/212 (32.08%), Postives = 103/212 (48.58%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R A V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M                GH +++ G+  +    +Y       MG+ AE+    H ITR++QD++ +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 64/205 (31.22%), Postives = 98/205 (47.80%), Query Frame = 2
Query:   71 RDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIE-CALKRANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG    G   +V A  L +  ++   L+   + P  +++V +G V      G   AR A+L AGIP +    T+N++C S M+A+  AA++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H I+R++QD++A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKAGVFRNVRAETLSAELMKGLLLRNPQLDPNAIEDVIWGCVQQTLEQGFNIARNASLLAGIPKTAGAVTVNRLCGSSMEAIHQAARAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLANNVAKASGM-------------MGLTAEMLGKLHGISREQQDAFAVRSHQRAHAATVEGRFAKEIYAIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 67/212 (31.60%), Postives = 104/212 (49.06%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R + V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M                GH +++ G+  +    +Y       MG+ AE+    H I+R++QD++A+RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++V IV   RTPMG    G      A  L +  ++  L+R  NV P  ++++++G V      G   AR A+L AG+P S+  TT+N++C S M+A+  A+++I +G  DI + GG+E M + P             +     GM             MG+ AE+    H I+R++QD++A  S  +   A   G F  EI P+E
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHMGHVPMNHGVDFHSGLSKNVAKASGM-------------MGLTAEMLGKMHGISREQQDAFAFASHQKAHRATIEGHFDSEILPME 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 65/209 (31.10%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSAN-LGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  +DV IV   RTPMG    G    V A KL +  I+  + R  N    L ++V +G V      G   AR  ++ AG+P +    T+N++C S M+A+  A+QSI  G  D+ V GG+E M +             + H   ++  +        N   MG+ AE+    H ITR++QD++ +RS      A   G +  EI P+E
Sbjct:    2 SLNPKDVVIVDAVRTPMGKSRNGQFRHVRAEKLSAQLIQALMARNPNWDIQLTEDVIWGCVNQTKEQGMNIARNISMLAGLPRTSAAQTVNRLCGSSMQALHSASQSIMTGNGDVFVIGGVEHMGHV-----------AMDHGIDLNPEMSKVTAKASN--MMGLTAEMLGKMHGITREQQDAFGVRSHKLAWEATQQGRWDNEIVPIE 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 66/215 (30.70%), Postives = 102/215 (47.44%), Query Frame = 2
Query:   44 LEPSESIKARDVCIV-----GVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVFSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPV 673
            L  +    A DV +V      + R   GGF       +  +L S  +   LK  N++P  + ++  GNV     G   AR A   + IP +V  +T+N+ CSSG++AV   A  I+ G  DI +A G+ESMS     LA+      +    +     +D L        MG+ +E  A +  I+R++QD++A+ S  +   AQ+ G F  EI PV
Sbjct:   27 LSGAPQASAADVVVVHGRRTAICRAGRGGF----KDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMS-----LADRGNPGNITSRLMEKEKARDCL------IPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPV 226          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_SHESA1.384e-1631.713-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHELP1.808e-1632.203-ketoacyl-CoA thiolase OS=Shewanella loihica (str... [more]
FADA_SHEDO1.808e-1632.203-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
THL_CLODI2.361e-1649.46Acetyl-CoA acetyltransferase (Fragment) OS=Clostri... [more]
FADA_PSEF52.361e-1632.083-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_SHESR3.084e-1631.223-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_PSEFR4.028e-1631.603-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_ALISL5.261e-1631.223-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_ALCBS5.261e-1631.103-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
THIK_HUMAN6.871e-1630.703-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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