FC923121

Overview
NameFC923121
Unique NameFC923121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 67/212 (31.60%), Postives = 102/212 (48.11%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M                GH +++ G+  +    +Y       MG+ AE+    H ITR++QD++ +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQDAFGVRSHQLAHKATVEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.973e-16
Identity = 68/206 (33.01%), Postives = 103/206 (50.00%), Query Frame = 2
Query:   74 DVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDT-IVDGMLKDGLWDVYNDFG-MGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +V IV   RTPMG    G+  +V A  L +  ++  + R   + P  ++++++G V      G   AR A+L AGIP++V  TT+N++C S M+A+  A ++I +G  +  + GG+E M + P           + H      GM K     V    G MG+ AE+    H I+R  QD +A RS  R  AA   G F  EI P+E
Sbjct:    3 NVVIVDCIRTPMGRSKAGAFRNVRAEDLSAHLMKGLISRNPQLDPNSIEDIYWGCVQQTLEQGFNVARNASLLAGIPHTVAATTVNRLCGSSMQALHDATRAIMVGDAETCIIGGVEHMGHVP-----------MNHGVDFHPGMSK----SVAKAAGMMGLTAEMLGRMHGISRQMQDEFAARSHQRAHAATIEGRFKNEILPIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++V IV   RTPMG    G      A  L +  ++  LKR  +V P  ++++++G V      G   AR +AL AG+P S+  TT+N++C S M+A+  A+++I +G  +I + GG+E M + P           + H       L   +        MG+ AE+    H I+R++QD++A+ S  +   A   G F  EI P+E
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRYTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----------MNHGVDFHSGLSKSVAKASG--MMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SHEAM (3-ketoacyl-CoA thiolase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.172e-15
Identity = 64/205 (31.22%), Postives = 97/205 (47.32%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFLGSL-SSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            +   IV   RTPMG   G +  +V A  L +  ++  L R   V P  +++V +G V      G   AR A+L AG+P +    T+N++C S M+A+  A+++I  G+ D  + GG+E M + P             +     GM             MG+ AE+    H I+R+ QD +A+RS  R  AA   G FA EI  +E
Sbjct:    2 KQAVIVDCIRTPMGRSKGGVFRNVRAETLSAELMKALLLRNPGVDPNTIEDVIWGCVQQTLEQGFNIARNASLLAGVPKTAGAVTVNRLCGSSMEALHQASRAIMTGMGDTFIIGGVEHMGHVPMNHGVDFHPGLAANVAKASGM-------------MGLTAEMLGKLHGISREMQDQFAVRSHQRAHAASIEGRFANEIYAIE 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 2
Query:   71 RDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            ++V IV   RTPMG    G      A  L +  ++  LKR  +V P  ++++++G V      G   AR +AL AG+P S+  TT+N++C S M+A+  A+++I +G  +I + GG+E M + P           + H       L   +        MG+ AE+    H I+R++QD++A+ S  +   A   G F  EI P+E
Sbjct:    2 KNVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLKRNPSVDPNDIEDIYWGCVQQTLEQGFNIARNSALLAGLPQSIAATTVNRLCGSSMQALHDASRAIMVGDAEICIIGGVEHMGHVP-----------MNHGVDFHSGLSKSVAKASG--MMGLTAEMLGKMHGISREQQDAFALASHQKAHKATIEGYFDSEILPME 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R N V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I     D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD++ +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHMGHVSMMHGVDPNPHMSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 66/209 (31.58%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R N V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I     D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD++ +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFVIGGVEHMGHVSMMHGVDPNPHMSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 66/205 (32.20%), Postives = 93/205 (45.37%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFL-GSLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFS-ANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEI 664
            S++ RDV IV  ARTPMG    G   +V A  L +  I   L R A + P  + ++ +G V      G   AR   L AG+P++V   T+N++C S M A+  AA +I  G+ D+ + GG+E M +             LGH                    MG+ AE  +  H ITR+  D +  RS  +   A   G FA EI
Sbjct:    2 SLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHMGHIDMN-QHVDPNPALGHSV------------AQAAGSMGLTAEYLSLLHGITREAMDEFGARSHRKAAEATEQGKFAREI 193          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 65/209 (31.10%), Postives = 96/209 (45.93%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKRAN-VKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R N V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I     D+ + GG+E M +               H     GM             MG+ AE+    H ITR++QD++ +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNNKVDPAEVEDVIWGCVNQTLEQGWNIARMASLLTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTNNGDVFIIGGVEHMGHVSMMHGVDPNPHMSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDAFGLRSHQLAHKATLEGKFKDEIIPMQ 197          
BLAST of FC923121 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 66/209 (31.58%), Postives = 95/209 (45.45%), Query Frame = 2
Query:   59 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVFSA-NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF*RGIAAQNSGLFAWEIAPVE 676
            S+  RDV IV   RTPMG   G +  +  A  + +  I   L+R   V P  V++V +G V      G   AR A+L   IP++    T++++C S M A+  AAQ+I  G  D+ V GG+E M +               H     GM             MG+ AE+    H ITR++QD + +RS      A   G F  EI P++
Sbjct:    2 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMGHVSMMHGVDPNPHLSLHAAKASGM-------------MGLTAEMLGKMHGITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQ 197          
The following BLAST results are available for this feature:
BLAST of FC923121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
FADA_PSEPF6.871e-1631.603-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_PHOPR8.973e-1633.013-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_VIBFM1.172e-1530.733-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SHEAM1.172e-1531.223-ketoacyl-CoA thiolase OS=Shewanella amazonensis ... [more]
FADA_VIBF11.531e-1530.733-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_PSESM1.531e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSE141.531e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_SACD21.999e-1532.203-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
FADA_PSEU21.999e-1531.103-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_PSEPK1.999e-1531.583-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]

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Properties
Property NameValue
Genbank descriptionC31701C11EF StrClemenN Citrus clementina cDNA clone C31701C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923121 ID=FC923121; Name=FC923121; organism=Citrus clementina; type=EST; length=716bp
GAAAGTTAAAGATTCTTTGAAGATACTATTTAGCATGGTGCCTTTAGAAC
CTTCAGAATCTATCAAAGCACGAGATGTTTGTATTGTGGGTGTTGCACGT
ACACCAATGGGAGGCTTTCTTGGCTCGCTCTCGTCTGTTTCAGCTACAAA
GCTGGGTTCCATTGCTATCGAATGTGCTCTTAAGAGGGCCAACGTGAAAC
CACTCCTTGTGCAAGAAGTCTTCTTTGGGAACGTTTTTAGCGCCAATTTA
GGACAGGCTCCCGCTAGACAGGCCGCCTTAGGTGCTGGGATTCCTAATTC
TGTCGTATGCACCACTATTAACAAAGTCTGTTCATCTGGGATGAAAGCTG
TAATGCTTGCTGCACAGAGTATTCAATTGGGTATCAATGATATTGTTGTT
GCGGGTGGCATGGAAAGCATGTCCAATGCGCCCAAGTATCTAGCAGAAGC
AAGAAAGGGATCTCGACTGGGACATGATACTATTGTTGATGGCATGCTCA
AAGATGGCCTGTGGGATGTCTATAATGACTTTGGGATGGGAGTATGTGCA
GAAATATGTGCTAATAAACATACCATAACAAGGGATGAGCAGGATTCATA
TGCTATTAGAAGCTTTTAGCGTGGGATTGCTGCACAAAATTCTGGTCTCT
TTGCTTGGGAAATCGCTCCGGTTGAAATGTCTAGTGGAAGAAGGAAACCA
TCATAATGTTGATAGG
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