FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_MYXXA (Chaperone protein dnaJ OS=Myxococcus xanthus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAA-EVFKTISCAYEVLSNEVTRTKYD 414
            D+Y+ LGV +SA+  D+K+AYR LARKYHPDV+  ++AA E FK +S A+EVLS+   R  YD
Sbjct:    4 DYYQTLGVDRSASAEDVKKAYRKLARKYHPDVNPGNKAAEEKFKQVSAAFEVLSDTRKRKLYD 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LG+++ AT  DIK++YR LA KYHPD +K+  A E FK IS AY VLS+   R +YDR
Sbjct:    6 DYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQYDR 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_SERP5 (Curved DNA-binding protein OS=Serratia proteamaculans (strain 568) GN=cbpA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y +LGV  +  L  IK AYR LARKYHPDVS +S A E FK ++ AYEVL ++  R +YD+
Sbjct:    5 DYYAILGVKPADDLKAIKTAYRRLARKYHPDVSTESNAEEQFKLVAEAYEVLKDDERRAEYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNPX (Chaperone protein dnaJ OS=Synechococcus sp. (strain WH8102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y +LGV + A    +KRAYR  ARKYHPD++K+  A + FK I  AYEVLS+  TR +YD+
Sbjct:    3 DYYDLLGVGRDADADTLKRAYRSKARKYHPDINKEPGAEDRFKEIGRAYEVLSDPQTRARYDQ 65          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAU (Chaperone protein dnaJ OS=Staphylococcus aureus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+++ A+  +IK+AYR L++KYHPD++K+  A E FK IS AYEVLS++  R   D+
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRATIDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_RICPR (Chaperone protein dnaJ OS=Rickettsia prowazekii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV+++A+ ADIK+AY  LA++YHPD +  + A + FK I+ AY+VL +E  R  YDR
Sbjct:    4 DYYQVLGVSKTASQADIKKAYLKLAKQYHPDTTNANDAEKKFKEINAAYDVLKDEQKRAAYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CLOTH (Chaperone protein dnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 34/67 (50.75%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  220 GEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEV-FKTISCAYEVLSNEVTRTKYDR 417
            G+ D+Y++LGV + A+ A+IK+AYR LA++YHPD++   +AAE  FK I+ AYEVLS+   R +YD+
Sbjct:    3 GKRDYYEILGVDRGASDAEIKKAYRKLAKQYHPDMNPGDKAAEAKFKEINEAYEVLSDPQKRARYDQ 69          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_PSESM (Curved DNA-binding protein OS=Pseudomonas syringae pv. tomato GN=cbpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.223e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDRALKF 429
            D+YK+L V  +A    IK AYR LARKYHPDVSK++ A + FK  S AYEVLS+   R +YD   K+
Sbjct:    5 DYYKILDVEPAADDKAIKTAYRKLARKYHPDVSKEAGAEDKFKEASEAYEVLSSPEKRAEYDELRKY 71          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_RICBR (Chaperone protein dnaJ OS=Rickettsia bellii (strain RML369-C) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPD--VSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV+++A  AD+K+AY  LA++YHPD   S D+ A + FK I+ AYEVL +E  R  YDR
Sbjct:    4 DYYQILGVSKTANSADLKKAYHKLAKQYHPDNAASGDTNAEKKFKEINAAYEVLKDEQKRAAYDR 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYCK (Chaperone protein dnaJ OS=Psychrobacter cryohalolentis (strain K5) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPD-VSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D Y++LGV+++A   +IKRAYR LA KYHPD  S+D  A E FK  S AYEVLS+E  R+ YDR
Sbjct:    5 DFYEILGVSKTADNKEIKRAYRKLAMKYHPDRNSEDPDAEEKFKEASMAYEVLSSEEKRSAYDR 68          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DNAJ_MYXXA1.702e-1155.56Chaperone protein dnaJ OS=Myxococcus xanthus GN=dn... [more]
DNAJ_METTE1.702e-1153.97Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
CBPA_SERP51.702e-1153.97Curved DNA-binding protein OS=Serratia proteamacul... [more]
DNAJ_SYNPX2.223e-1152.38Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_STAAU2.223e-1150.79Chaperone protein dnaJ OS=Staphylococcus aureus GN... [more]
DNAJ_RICPR2.223e-1150.79Chaperone protein dnaJ OS=Rickettsia prowazekii GN... [more]
DNAJ_CLOTH2.223e-1150.75Chaperone protein dnaJ OS=Clostridium thermocellum... [more]
CBPA_PSESM2.223e-1153.73Curved DNA-binding protein OS=Pseudomonas syringae... [more]
DNAJ_RICBR2.903e-1150.77Chaperone protein dnaJ OS=Rickettsia bellii (strai... [more]
DNAJ_PSYCK2.903e-1157.81Chaperone protein dnaJ OS=Psychrobacter cryohalole... [more]

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Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
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