FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_PSEPW (Curved DNA-binding protein OS=Pseudomonas putida (strain W619) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDRALKF 429
            D+YK+LGV  +A    IK AYR LARKYHPDVSK+  A E FK  + AYEVL +   R ++D   K+
Sbjct:    5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFDEIRKY 71          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_PSEPK (Curved DNA-binding protein OS=Pseudomonas putida (strain KT2440) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDRALKF 429
            D+YK+LGV  +A    IK AYR LARKYHPDVSK+  A E FK  + AYEVL +   R ++D   K+
Sbjct:    5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFDEIRKY 71          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_PSEP1 (Curved DNA-binding protein OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cbpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDRALKF 429
            D+YK+LGV  +A    IK AYR LARKYHPDVSK+  A E FK  + AYEVL +   R ++D   K+
Sbjct:    5 DYYKILGVEPTADEKAIKAAYRKLARKYHPDVSKERDAEEKFKEANEAYEVLGDAQKRAEFDEIRKY 71          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV ++A+  +IK+A+R LAR+YHPDV+K   A   FK I+ AYEVLS+   R+ YDR
Sbjct:    6 DYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV ++A+  +IK+A+R LAR+YHPDV+K   A   FK I+ AYEVLS+   R+ YDR
Sbjct:    6 DYYEVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDR 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMP (Chaperone protein dnaJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D Y++LGV++ A    +K AYR LAR+YHPDV+KD  A + FK I  AYE L++  TR +YD+
Sbjct:    3 DFYQILGVSRDADANTLKSAYRKLARQYHPDVNKDPGAEDKFKEIGKAYEALADPETRARYDQ 65          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_HAMD5 (Chaperone protein dnaJ OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LG+A++A   DIK AY+ LA+KYHPD +KD  A   FK +  AYEVLS++  R  YD+
Sbjct:    5 DYYEILGIAKNANEQDIKDAYKRLAKKYHPDRNKDKDAETKFKEMKEAYEVLSDQQKRAAYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLL2 (Chaperone protein dnaJ OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 34/64 (53.12%), Postives = 50/64 (78.12%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR-AAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV++SA+  +IK+AYR LA +YHPD + D++ A E FK ++ AYEVLSN+  R +YD+
Sbjct:    4 DYYEVLGVSRSASKDEIKKAYRKLALQYHPDKNPDNKDAEEHFKEVNEAYEVLSNDDKRRRYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_RICPU (Chaperone protein dnaJ OS=Rickettsia peacockii (strain Rustic) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            ++Y++LGV+++A+ AD+K+AY  LA++YHPD +    A + FK I+ AY+VL +E TR  YDR
Sbjct:    4 NYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQTRAAYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_RICB8 (Chaperone protein dnaJ OS=Rickettsia bellii (strain OSU 85-389) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPD--VSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV+++A  AD+K+AY  LA++YHPD   + D+ A + FK I+ AYEVL +E  R  YDR
Sbjct:    4 DYYQILGVSKTANSADLKKAYHKLAKQYHPDNAAAGDTNAEKKFKEINAAYEVLKDEQKRAAYDR 68          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CBPA_PSEPW3.791e-1152.24Curved DNA-binding protein OS=Pseudomonas putida (... [more]
CBPA_PSEPK3.791e-1152.24Curved DNA-binding protein OS=Pseudomonas putida (... [more]
CBPA_PSEP13.791e-1152.24Curved DNA-binding protein OS=Pseudomonas putida (... [more]
DNAJ_ROSS14.952e-1153.97Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_ROSCS4.952e-1153.97Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_PROMP4.952e-1150.79Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_HAMD54.952e-1150.79Chaperone protein dnaJ OS=Hamiltonella defensa sub... [more]
DNAJ_CHLL24.952e-1153.13Chaperone protein dnaJ OS=Chlorobium limicola (str... [more]
DNAJ_RICPU6.467e-1147.62Chaperone protein dnaJ OS=Rickettsia peacockii (st... [more]
DNAJ_RICB86.467e-1149.23Chaperone protein dnaJ OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
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