FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_PROVI (Chaperone protein dnaJ OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAE-VFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV +SA   +IK+AYR LA KYHPD + D++ AE  FK ++ AYEVLSN+  R +YD+
Sbjct:    4 DYYEILGVGRSADKDEIKKAYRKLALKYHPDKNPDNKDAEDHFKEVNEAYEVLSNDDKRRRYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_ONYPE (Chaperone protein dnaJ OS=Onion yellows phytoplasma GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y +LG+ + A+  DIK+AYR LA+KYHPD+SK++ A   FK +  AY VL +   ++ YDR
Sbjct:    5 DYYHILGLDKDASPEDIKKAYRSLAKKYHPDISKEANAENKFKEVQEAYSVLGDASKKSNYDR 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein dnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR-AAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV ++AT  +IKRAYR LA++YHPD +  ++ A E FK I+ AYEVLS+   R KYD+
Sbjct:    6 DYYEILGVPRNATQEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRRKYDQ 69          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ1_STRAW (Chaperone protein dnaJ 1 OS=Streptomyces avermitilis GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  223 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSK-DSRAAEVFKTISCAYEVLSNEVTRTKYDRA 420
            E D+YKVLGV + AT A+IK+AYR LAR++HPD +K +++A E FK IS A ++L +   R +YD A
Sbjct:    8 EKDYYKVLGVPKDATEAEIKKAYRKLAREFHPDANKGNAKAEERFKEISEANDILGDTKKRKEYDEA 74          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: CBPA_SALCH (Curved DNA-binding protein OS=Salmonella choleraesuis GN=cbpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.467e-11
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK ++ A+EVLS+E  R +YD+
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPNAEARFKEVAEAWEVLSDEQRRAEYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_NITOC (Chaperone protein dnaJ OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEV-FKTISCAYEVLSNEVTRTKYDR 417
            D+Y+ LGVA++A+ A+IK+AYR LA +YHPD + D +AAE  FK I  AY+VLS+   RT YD+
Sbjct:    5 DYYEALGVARNASDAEIKKAYRRLAMRYHPDRNPDDKAAEEHFKEIQEAYDVLSDARKRTAYDQ 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LG+ + A++ DIK+ YR LA +YHPD +KD  A + FK IS AY VLS+   R +YDR
Sbjct:    6 DYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQYDR 68          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLPD (Chaperone protein dnaJ OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR-AAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+++SAT  +IK+AYR LA +YHPD + D++ A E FK ++ AYE LSN+  R +YD+
Sbjct:    4 DYYEVLGLSRSATKDEIKKAYRKLAMQYHPDKNPDNKDAEEHFKEVNEAYEALSNDDKRRRYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSR-AAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV++SA   +IK+AYR LA KYHPD + D++ A E FK  + AYEVLSN+  R +YD+
Sbjct:    4 DYYEILGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DNAJ_PROVI6.467e-1153.13Chaperone protein dnaJ OS=Prosthecochloris vibriof... [more]
DNAJ_ONYPE6.467e-1147.62Chaperone protein dnaJ OS=Onion yellows phytoplasm... [more]
DNAJ_CALS86.467e-1153.13Chaperone protein dnaJ OS=Caldicellulosiruptor sac... [more]
DNAJ1_STRAW6.467e-1152.24Chaperone protein dnaJ 1 OS=Streptomyces avermitil... [more]
CBPA_SALCH6.467e-1152.38Curved DNA-binding protein OS=Salmonella choleraes... [more]
DNAJ_NITOC8.446e-1154.69Chaperone protein dnaJ OS=Nitrosococcus oceani (st... [more]
DNAJ_METAC8.446e-1150.79Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNAJ_CHLPD8.446e-1151.56Chaperone protein dnaJ OS=Chlorobium phaeobacteroi... [more]
DNAJ_CHLP88.446e-1153.13Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]

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Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
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