FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923129_ssr199 microsatellite FC923129_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11750 contig Ccv1_Contig11750:9..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BACAA (Chaperone protein dnaJ OS=Bacillus anthracis (strain A0248) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.290e-13
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+++ A+  +IK+AYR LA+KYHPDVSK+  A E FK +  AYEVLS++  R +YD+
Sbjct:    5 DYYEVLGLSKGASKDEIKKAYRRLAKKYHPDVSKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_STAS1 (Chaperone protein dnaJ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV++SA+  +IK+AYR L+++YHPD++K+  A E FK IS AYEVLS+E  R  YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DJC16_RAT (DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYD 414
            D Y+VLGV+++A+ ADIK+AY+ LAR++HPD +KD  A + F  IS AYE+LSNE  RT YD
Sbjct:   29 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYD 90          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DJC16_PONAB (DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D YKVLGV+++A+ ADIK+AY+ LAR++HPD +KD  A + F  IS AYE+LSNE  R+ YD+
Sbjct:   29 DPYKVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQ 91          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DJC16_MOUSE (DnaJ homolog subfamily C member 16 OS=Mus musculus GN=Dnajc16 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.024e-13
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYD 414
            D Y+VLGV+++A+ ADIK+AY+ LAR++HPD +KD  A + F  IS AYE+LSNE  RT YD
Sbjct:   29 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 90          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV++     ++K+AYR LARKYHPDV+K+  A + FK I+ AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LISW6 (Chaperone protein dnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+++SA+  +IK+AYR L+++YHPD++K++ A E FK IS AYEVLS+   R +YD+
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BACLD (Chaperone protein dnaJ OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV +SA+  +IK+AYR L++KYHPD++K++ AAE FK +  AYE LS++  R  YD+
Sbjct:    5 DYYEVLGVGKSASKDEIKKAYRKLSKKYHPDINKEAGAAEKFKEVKEAYETLSDDQKRAHYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BACA2 (Chaperone protein dnaJ OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV++SA+  +IK+AYR L++KYHPD++K+S A E FK +  AYE LS++  R +YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKESGADEKFKEVKEAYEALSDDQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DJC16_CHICK (DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  223 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            E D Y+VLGV +S++ ADIK+AY+ LAR++HPD +KD  A + F  IS AYE+LSNE  R  +DR
Sbjct:   26 ERDPYRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRANFDR 90          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DNAJ_BACAA5.290e-1353.97Chaperone protein dnaJ OS=Bacillus anthracis (stra... [more]
DNAJ_STAS16.910e-1355.56Chaperone protein dnaJ OS=Staphylococcus saprophyt... [more]
DJC16_RAT6.910e-1358.06DnaJ homolog subfamily C member 16 OS=Rattus norve... [more]
DJC16_PONAB6.910e-1357.14DnaJ homolog subfamily C member 16 OS=Pongo abelii... [more]
DJC16_MOUSE9.024e-1358.06DnaJ homolog subfamily C member 16 OS=Mus musculus... [more]
DNAJ_NOSP71.179e-1253.97Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_LISW61.179e-1252.38Chaperone protein dnaJ OS=Listeria welshimeri sero... [more]
DNAJ_BACLD1.179e-1252.38Chaperone protein dnaJ OS=Bacillus licheniformis (... [more]
DNAJ_BACA21.179e-1252.38Chaperone protein dnaJ OS=Bacillus amyloliquefacie... [more]
DJC16_CHICK1.179e-1255.38DnaJ homolog subfamily C member 16 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
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