FC923129

Overview
NameFC923129
Unique NameFC923129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
StrClemenNcdna_library
Alignments
Feature NameTypeLocationAnalysis
FC923129_ssr199 microsatellite FC923129_ssr199:199..210. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11750 contig Ccv1_Contig11750:9..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LISIN (Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+++SA+  +IK+AYR L+++YHPD++K++ A E FK IS AYE LS+   R +YD+
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  223 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            E D+Y +LGV++ A+  DIKRAYR LA KYHPDV+ +  A E FK I+ AYE LS+   R +YD+
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  223 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            E D+Y +LGV++ A+  DIKRAYR LA KYHPDV+ +  A E FK I+ AYE LS+   R +YD+
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D Y+VLGVA+ A   +IK+AYR LAR+YHPDV+K++ A E FK +  AY++LS    R +YDR
Sbjct:    4 DLYEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEEKFKEVKDAYDILSEPQKRAQYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_BACP2 (Chaperone protein dnaJ OS=Bacillus pumilus (strain SAFR-032) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 31/63 (49.21%), Postives = 51/63 (80.95%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV++SA+  +IK+AYR L++KYHPD++K++ + E FK +  AYE LS++  R++YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein dnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.849e-12
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y++LGV++ A   +IK+AYR LARKYHPD++KD   A E FK IS AYE+LS+   R +YD+
Sbjct:    6 DYYEILGVSRDADQKEIKKAYRRLARKYHPDINKDDPDAEEKFKEISEAYEILSDPDKRARYDQ 69          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_RICAH (Chaperone protein dnaJ OS=Rickettsia akari (strain Hartford) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+YK+LGV+++A+ AD+K+AY  LA++YHPD + D  A + FK I+ AY+VL +E  R  YDR
Sbjct:    4 DYYKILGVSKTASQADLKKAYLKLAKQYHPDTTDDKDAEKKFKEINRAYDVLKDEQKRAAYDR 66          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LYSSC (Chaperone protein dnaJ OS=Lysinibacillus sphaericus (strain C3-41) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLG+ +SAT  +IK+AYR L+++YHPD++K+  A E FK I+ AYEVLS++  + +YD+
Sbjct:    5 DYYEVLGLTKSATKDEIKKAYRKLSKQYHPDLNKEPGADEKFKEIAEAYEVLSDDQKKARYDQ 67          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_LEIXX (Chaperone protein dnaJ OS=Leifsonia xyli subsp. xyli GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            DHY+VLGV ++AT  +IK+AYR LAR+ HPDV+  + A E FK ++ AY+VLS+   R +YDR
Sbjct:    3 DHYEVLGVERNATPDEIKKAYRRLARELHPDVNPSTEAQERFKLVTHAYDVLSDPQQRQQYDR 65          
BLAST of FC923129 vs. ExPASy Swiss-Prot
Match: DNAJ_PROA2 (Chaperone protein dnaJ OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  229 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKD-SRAAEVFKTISCAYEVLSNEVTRTKYDR 417
            D+Y+VLGV +SAT  +IK+AYR LA KYHPD + D S A E FK  + AYEVLSN+  R +YD+
Sbjct:    4 DYYEVLGVGRSATKDEIKKAYRKLAMKYHPDKNPDNSEAEEKFKEANEAYEVLSNDDKRRRYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC923129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
DNAJ_LISIN4.479e-1250.79Chaperone protein dnaJ OS=Listeria innocua GN=dnaJ... [more]
DNAJ_LACRJ4.479e-1253.85Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACRD4.479e-1253.85Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_BREBN4.479e-1253.97Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
DNAJ_BACP24.479e-1249.21Chaperone protein dnaJ OS=Bacillus pumilus (strain... [more]
DNAJ_HALOH5.849e-1254.69Chaperone protein dnaJ OS=Halothermothrix orenii (... [more]
DNAJ_RICAH7.639e-1250.79Chaperone protein dnaJ OS=Rickettsia akari (strain... [more]
DNAJ_LYSSC7.639e-1250.79Chaperone protein dnaJ OS=Lysinibacillus sphaericu... [more]
DNAJ_LEIXX7.639e-1253.97Chaperone protein dnaJ OS=Leifsonia xyli subsp. xy... [more]
DNAJ_PROA29.977e-1257.81Chaperone protein dnaJ OS=Prosthecochloris aestuar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701D07EF StrClemenN Citrus clementina cDNA clone C31701D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923129 ID=FC923129; Name=FC923129; organism=Citrus clementina; type=EST; length=699bp
GGAACAAATGCATGAACGATAATGCAGGCGCAGCTACTGGTGGGACCCAT
AACTCCCACCACCGGCTCCGATGCGTTCTCCTCCATCATCAAAAACAGTT
TCCTGATCTCCTCTCCTCGCCGCAGCACCACCGGCAGTAACCGCCACAGA
AGAACCCGCCACCGCTTGGTGGTCGCGTCATCGTCTTGGTCATCATCCGC
GGCGGCGGCGGCCATAAACGGCGAGCCGGACCATTACAAAGTTCTGGGCG
TCGCTCAAAGTGCCACGCTAGCTGATATAAAGAGGGCTTATCGCCTCCTC
GCTCGTAAGTATCATCCTGATGTTAGCAAGGATTCACGAGCGGCTGAAGT
GTTCAAGACCATCAGTTGTGCTTATGAAGTATTATCTAATGAAGTAACAA
GAACTAAGTATGATCGGGCACTCAAATTTCGAAATGATAGTGACAGATCA
CGTAGAGGAAACAGGAGGTACAGCAGTGAATTTGAAGACGGGGTAAGGAT
CTCTACATGGGCTGAACTGAGGCGAAAACTGCAATATGAGAGACATTGGA
AAAATTATAACTCANAAGAAGAGTATTCTTCCTTCTATCGTAAAGCACCA
GTCCGGGAAGTTCAAGAGGAAAACCCAGGTGATAAGAGAGGCTCCTTTAC
TGCAGTGCTAAGATCAGCATTTATCTCTTTATCTTACTGAANGTCTTTG
back to top