FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_GLOVI (50S ribosomal protein L11 OS=Gloeobacter violaceus GN=rplK PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.784e-48
Identity = 97/131 (74.05%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKLAL AGKA PAPPVGPALG  GVNIM FCK+YNARTAD+ G VIPVEITV++DRSFTF+LKTPPASVLL KAAGVEKGS  P +++ G IT  QLR IA +KLPDLN   +E+AM+IIAGTA NMGI I
Sbjct:    9 IKLALPAGKANPAPPVGPALGQHGVNIMMFCKEYNARTADQVGMVIPVEITVFEDRSFTFVLKTPPASVLLTKAAGVEKGSGKPNKEKAGTITGAQLRQIAEQKLPDLNANDVEAAMKIIAGTARNMGIVI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNPX (50S ribosomal protein L11 OS=Synechococcus sp. (strain WH8102) GN=rplK PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.330e-48
Identity = 96/132 (72.73%), Postives = 108/132 (81.82%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIM FCK+YNART DKAG+VIPVEI+VY+DRSFTFI KTPPASVL+ KAA +EKGS +  +  VG I   QL  IA  KLPDLNCTS+ESAMRII GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMMFCKEYNARTQDKAGFVIPVEISVYEDRSFTFITKTPPASVLITKAAKIEKGSGESAKGNVGSINRAQLEEIAKTKLPDLNCTSVESAMRIIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNSC (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9605) GN=rplK PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.044e-48
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIM FCK+YNART DKAGYVIPVEI+V++DRSFTFI KTPPASVL+ KAA ++KGS +  +  VG I+  QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:    8 VIKLALDAGKANPAPPVGPALGQHGVNIMMFCKEYNARTQDKAGYVIPVEISVFEDRSFTFITKTPPASVLITKAAKIQKGSGESAKGSVGSISRAQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_MICAN (50S ribosomal protein L11 OS=Microcystis aeruginosa (strain NIES-843) GN=rplK PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.975e-48
Identity = 93/132 (70.45%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIMAFCKDYNA+TAD+AG +IPVEI+V++DRSFTF+LKTPPASVL+ KAAGVE+GS +P ++ V  IT +QLR IA  K+PDLN   IE+AM I+AGTA NMG+ I
Sbjct:    8 IIKLALPAGKANPAPPVGPALGQHGVNIMAFCKDYNAKTADQAGMIIPVEISVFEDRSFTFVLKTPPASVLIRKAAGVERGSNEPNKKFVATITRDQLREIAQTKMPDLNANDIEAAMNIVAGTARNMGVKI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CYAP7 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7424) GN=rplK PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIMAFCK+YN +T+D+ G VIPVEI+V++DRSFTF+LKTPPASVL+ KAAGVE+GS +P ++ VG IT +QLR IA  K+PDLN   IE+AM+I+AGTA NMGI +
Sbjct:    8 IIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNGKTSDQVGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAGVERGSNEPNKKNVGSITQDQLREIAQTKMPDLNANDIEAAMKIVAGTARNMGISV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNS9 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9902) GN=rplK PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIM FCK+YNART DKAG VIPVEI+V++DRSFTFI KTPPASVL+ KAAG+EKGS D  +  VG I+  QL  IA  KLPDLNC+S++SAMRII GTA NMG+ +
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMMFCKEYNARTQDKAGLVIPVEISVFEDRSFTFITKTPPASVLITKAAGIEKGSGDSAKGSVGSISRAQLEEIAKTKLPDLNCSSVDSAMRIIEGTARNMGVAV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNP2 (50S ribosomal protein L11 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplK PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNA+T+D+AG +IPVEI+VY+DRSFTFILKTPPASVL+ KAAGVEKGS  P +Q+ G I+  QL+ IA  K+PDLN   IE+AM I+AGTA NMGI +
Sbjct:    8 VIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTSDQAGMIIPVEISVYEDRSFTFILKTPPASVLIRKAAGVEKGSAQPNKQKAGSISRAQLQEIAQTKMPDLNANDIEAAMNIVAGTARNMGITV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNJA (50S ribosomal protein L11 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplK PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48
Identity = 88/132 (66.67%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++KLA++AGKATPAPP+GPALG  GVNIMAFCK+YNA+TAD+AG V+PVEI++Y+DRSFTF+LKTPPASVL+ KA G+E GS +P + +VG +T  QLR IA +KLPDLN   +E+AM+IIAGTA +MG+ I
Sbjct:    8 VVKLAIQAGKATPAPPIGPALGQHGVNIMAFCKEYNAKTADQAGMVVPVEISIYEDRSFTFVLKTPPASVLIKKALGIESGSSEPHKVKVGSLTRAQLRQIAEQKLPDLNARDVEAAMKIIAGTARSMGVTI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM9 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.157e-47
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YNA+T DKAG+VIPVEI+V++DRSFTFI KTPPA+VL+ KAAG++KGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:    8 VIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTQDKAGFVIPVEISVFEDRSFTFITKTPPAAVLITKAAGIDKGSGESSKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_ANAVT (50S ribosomal protein L11 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.157e-47
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY+DRSFTF+LKTPPASVL+ KAA +E+GS +P +++VG IT  QLR IA  KLPDLN   I++AM+I+AGTA NMG+ +
Sbjct:    8 VIKLALNAGKANPAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVYEDRSFTFVLKTPPASVLIRKAAKIERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_GLOVI1.784e-4874.0550S ribosomal protein L11 OS=Gloeobacter violaceus... [more]
RL11_SYNPX2.330e-4872.7350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNSC3.044e-4872.7350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_MICAN3.975e-4870.4550S ribosomal protein L11 OS=Microcystis aeruginos... [more]
RL11_CYAP75.192e-4868.9450S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_SYNS98.856e-4871.2150S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNP28.856e-4870.4550S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNJA8.856e-4866.6750S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROM91.157e-4768.9450S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_ANAVT1.157e-4768.9450S ribosomal protein L11 OS=Anabaena variabilis (... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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