FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_ANASP (50S ribosomal protein L11 OS=Anabaena sp. (strain PCC 7120) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.157e-47
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+VY+DRSFTF+LKTPPASVL+ KAA +E+GS +P +++VG IT  QLR IA  KLPDLN   I++AM+I+AGTA NMG+ +
Sbjct:    8 VIKLALNAGKANPAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVYEDRSFTFVLKTPPASVLIRKAAKIERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CYAA5 (50S ribosomal protein L11 OS=Cyanothece sp. (strain ATCC 51142) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.511e-47
Identity = 91/133 (68.42%), Postives = 111/133 (83.46%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKLAL AGKA PAPPVGPALG  GVNIMAFCK+YNA+T+D+AG VIPVEI+V++DRSFTF+LKTPPASVL+ KAAG+EKGS  P  Q+VG I+ +QL+ IA  K+PDLN   I++AM I+ GTA NMG+ I+
Sbjct:    8 LIKLALPAGKANPAPPVGPALGQHGVNIMAFCKEYNAKTSDQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAGIEKGSAQPNNQKVGSISRDQLKEIAQTKMPDLNANDIDAAMNIVEGTARNMGVTIN 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROMT (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain NATL2A) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.973e-47
Identity = 92/132 (69.70%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YN+RT DKAG+VIPVEI+V++DRSF+FI KTPPASVL+ KAAG+ KGS +  +   G I+  QL  IA  KLPDLNC+SIESAM++I GTA NMG+ I
Sbjct:    8 LIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNSRTQDKAGFVIPVEISVFEDRSFSFITKTPPASVLITKAAGIAKGSGESAKGSAGSISTSQLEEIAKTKLPDLNCSSIESAMKVIEGTAKNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PROM1 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain NATL1A) GN=rplK PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.973e-47
Identity = 92/132 (69.70%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL+AGKA PAPPVGPALG  GVNIMAFCK+YN+RT DKAG+VIPVEI+V++DRSF+FI KTPPASVL+ KAAG+ KGS +  +   G I+  QL  IA  KLPDLNC+SIESAM++I GTA NMG+ I
Sbjct:    8 LIKLALQAGKANPAPPVGPALGQHGVNIMAFCKEYNSRTQDKAGFVIPVEISVFEDRSFSFITKTPPASVLITKAAGIAKGSGESAKGSAGSISTSQLEEIAKTKLPDLNCSSIESAMKVIEGTAKNMGVSI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_TRIEI (50S ribosomal protein L11 OS=Trichodesmium erythraeum (strain IMS101) GN=rplK PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.577e-47
Identity = 90/132 (68.18%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLA+ AGKA P+PP+GPALG  GVNIMAFCK+YNA+TAD+AG V+PVEI+VY+DRSFTF+LKTPPA+VL+ KAAGVE GS +P + +VG IT  QL+ IA  K+PDLN  +IE+AM+I+AGTA NMGI I
Sbjct:    8 VIKLAITAGKANPSPPIGPALGQHGVNIMAFCKEYNAKTADQAGTVVPVEISVYEDRSFTFVLKTPPAAVLIKKAAGVESGSSEPNRTKVGSITQAQLQEIAQTKMPDLNANNIEAAMKIVAGTARNMGITI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYNJB (50S ribosomal protein L11 OS=Synechococcus sp. GN=rplK PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47
Identity = 86/132 (65.15%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++KLA++AGKATPAPP+GPALG  GVNIMAFCK+YNA+TAD+AG V+PVEI++++DRSFTF+LKTPPASVL+ KA G+E GS +P + +VG +T  QLR IA +KLPDLN   +E+AM+IIAGTA +MG+ +
Sbjct:    8 VVKLAIQAGKATPAPPIGPALGQHGVNIMAFCKEYNAKTADQAGMVVPVEISIFEDRSFTFVLKTPPASVLIKKALGIESGSSEPHKTKVGSLTRAQLRQIAEQKLPDLNAHDVEAAMKIIAGTARSMGVTV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_NOSP7 (50S ribosomal protein L11 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplK PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47
Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLAL AGKA PAPPVGPALG  GVNIM FCK+YNA+TAD+AG VIPVEI+V++DRSFTF+LKTPPASVL+ KAA VEKGS +P +++VG IT  QL+ IA  KLPDLN   I++AM+I+AGTA NMGI +
Sbjct:    8 VIKLALNAGKANPAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAKVEKGSNEPNKKKVGSITKAQLQEIAQTKLPDLNANDIDAAMKIVAGTAKNMGITV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_ACAM1 (50S ribosomal protein L11 OS=Acaryochloris marina (strain MBIC 11017) GN=rplK PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47
Identity = 90/132 (68.18%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKLA+ AGKA PAPP+GPALG  GVNIM FCK+YNA+T+D+AG V+PVEI+VY+DRSFTFILKTPPASVL+ KAAG+EKGS +P   QVG+IT  QL+ IA  K+PDLN   IE+AM I+AGTA NMG+ +
Sbjct:    8 IIKLAIAAGKANPAPPIGPALGQHGVNIMMFCKEYNAKTSDQAGLVVPVEISVYEDRSFTFILKTPPASVLIKKAAGIEKGSGEPNAVQVGQITKAQLQEIAQTKMPDLNANDIEAAMNIVAGTARNMGVAV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_PORYE (50S ribosomal protein L11, chloroplastic OS=Porphyra yezoensis GN=rpl11 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.395e-47
Identity = 91/130 (70.00%), Postives = 109/130 (83.85%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGI 642
            ++KLAL AGKATPAPPVGPALG  GVNI+ FCK+YNARTADK+G VIPVEI++Y+DRSFTFILKTPPASVL+ KAAG+ KGS +P  ++VG IT +QL +IA  KLPDLN  +I  AM+I+ GTA NMGI
Sbjct:    8 IVKLALNAGKATPAPPVGPALGQHGVNIVMFCKEYNARTADKSGLVIPVEISIYEDRSFTFILKTPPASVLIAKAAGLNKGSGEPNTKKVGSITNKQLESIAETKLPDLNTNNIPQAMKIVGGTAKNMGI 137          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_PORPU (50S ribosomal protein L11, chloroplastic OS=Porphyra purpurea GN=rpl11 PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 90/133 (67.67%), Postives = 111/133 (83.46%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KLAL AGKATPAPPVGPALG  GVNI+ FCK+YNARTADK G VIPVEI+VY+DRSF+FILKTPPASVL++KAAG+ KGS +P  +++G IT +QL +IA  KLPDLN  ++  AM+I+ GTA NMGI I+
Sbjct:    8 IVKLALNAGKATPAPPVGPALGQHGVNIVMFCKEYNARTADKTGLVIPVEISVYEDRSFSFILKTPPASVLIVKAAGLNKGSGEPNIKKIGSITTKQLESIAETKLPDLNTNNLSQAMKIVGGTAKNMGILIE 140          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_ANASP1.157e-4768.9450S ribosomal protein L11 OS=Anabaena sp. (strain ... [more]
RL11_CYAA51.511e-4768.4250S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_PROMT1.973e-4769.7050S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM11.973e-4769.7050S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_TRIEI2.577e-4768.1850S ribosomal protein L11 OS=Trichodesmium erythra... [more]
RL11_SYNJB3.365e-4765.1550S ribosomal protein L11 OS=Synechococcus sp. GN=... [more]
RL11_NOSP73.365e-4769.7050S ribosomal protein L11 OS=Nostoc punctiforme (s... [more]
RL11_ACAM13.365e-4768.1850S ribosomal protein L11 OS=Acaryochloris marina ... [more]
RK11_PORYE4.395e-4770.0050S ribosomal protein L11, chloroplastic OS=Porphy... [more]
RK11_PORPU7.497e-4767.6750S ribosomal protein L11, chloroplastic OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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