FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEP1 (50S ribosomal protein L11 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 89/131 (67.94%), Postives = 110/131 (83.97%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL+KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:    9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLMKAAGLEKGSSEPKRKIVGKVTRKQIEEIARTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOAB (50S ribosomal protein L11 OS=Clostridium acetobutylicum GN=rplK PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 90/132 (68.18%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKL L AGKATPAPPVGPALG  GVNIMAFCK+YNA+TA++AG+ IPV ITVY DRSF+FILKTPPA+VL+ KAAG+E GS  P + +VGKIT EQ++ IA  K+PDLN  S+E+AM +IAGTA +MG+++
Sbjct:    8 LIKLQLPAGKATPAPPVGPALGQHGVNIMAFCKEYNAKTANQAGFTIPVVITVYQDRSFSFILKTPPAAVLIKKAAGIESGSGVPNKNKVGKITKEQVKEIAQTKMPDLNAASLEAAMSMIAGTARSMGVEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THESQ (50S ribosomal protein L11 OS=Thermotoga sp. (strain RQ2) GN=rplK PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:    9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEMA (50S ribosomal protein L11 OS=Thermotoga maritima GN=rplK PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 89/131 (67.94%), Postives = 109/131 (83.21%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:    9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_ODOSI (50S ribosomal protein L11, chloroplastic OS=Odontella sinensis GN=rpl11 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 93/132 (70.45%), Postives = 105/132 (79.55%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL AGKATPAPPVGPALG  GVNI AFCK+YNA+T DK G +IPVEI+VY+DRS+TFILKTPPASVLL  AA ++KGS  P +  VG IT  QL  IA+ KLPDLN T I SAM+I+ GTA NMGI I
Sbjct:    8 LIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNAKTTDKTGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKIKKGSSTPNRVNVGSITKSQLEEIASIKLPDLNTTKISSAMKIVEGTARNMGISI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_FRASC (50S ribosomal protein L11 OS=Frankia sp. (strain CcI3) GN=rplK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 91/132 (68.94%), Postives = 106/132 (80.30%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKL + AGKATPAPPVGPALG  GVNIM FCK YNA T  +AG V+PVEITVYDDRSFTF+ KTPPA+ L+LKAAGVEKGS  P + +V K+T  Q+R IA  KLPDLN TSIE+A +IIAGTA +MGI +
Sbjct:   11 IIKLQINAGKATPAPPVGPALGQHGVNIMEFCKQYNAATESQAGNVVPVEITVYDDRSFTFVTKTPPAARLILKAAGVEKGSGTPHRDKVAKLTTAQIREIAQTKLPDLNATSIEAAEKIIAGTARSMGITV 142          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOB8 (50S ribosomal protein L11 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplK PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 88/133 (66.17%), Postives = 111/133 (83.46%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L+AGKATPAPPVGPALG  GVNIM FCK++NA+TA++AGY+IPV ITVY DRSF+FILKTPPA+VL+ K  G+E GS  P + +VGK+T +QL+ IA  K+PDLN  S+ESAMR+IAGTA +MG+ I+
Sbjct:    8 MIKLQLQAGKATPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGYIIPVVITVYQDRSFSFILKTPPAAVLIKKEIGLESGSGVPNKTKVGKLTQDQLKKIAETKMPDLNAASLESAMRMIAGTARSMGVTIE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_PHATR (50S ribosomal protein L11, chloroplastic OS=Phaeodactylum tricornutum GN=rpl11 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 93/132 (70.45%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL A KATPAPPVGPALG  GVNI AFCK+YNART DKAG +IPVEI+VY+DRS+TF+LKTPPASVLL  AA ++KGS +P    VG IT  QL  IA  KLPDLN T I SAM+I+ GTA NMGI I
Sbjct:    8 LIKLALPASKATPAPPVGPALGQHGVNIAAFCKEYNARTNDKAGLIIPVEISVYEDRSYTFVLKTPPASVLLANAAKIKKGSSNPNTVSVGSITKTQLEEIANIKLPDLNTTKISSAMKIVEGTARNMGISI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THENN (50S ribosomal protein L11 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 88/131 (67.18%), Postives = 107/131 (81.68%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL L AGKATPAPPVGPALG  GVNIM FCK +NA TADKAG ++PV ITVY+D+SFTFI+KTPPAS LL KAAG+E GS +PK++ VGK+T +Q+  IA  K+PDLN   +E+AMRII GTA +MGI++
Sbjct:    9 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIESGSSEPKRKIVGKVTRKQIEEIAKIKMPDLNANDLEAAMRIIEGTARSMGIEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_THAPS (50S ribosomal protein L11, chloroplastic OS=Thalassiosira pseudonana GN=rpl11 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKLAL AGKATPAPPVGPALG  GVNI AFCK+YNART +K G +IPVEI+VY+DRS+TFILKTPPASVLL  AA V+KGS  P +  VG +T  QL  IA  KLPDLN T I SA+RI+ GTA NMGI +
Sbjct:    8 LIKLALPAGKATPAPPVGPALGQHGVNIAAFCKEYNARTTEKMGLIIPVEISVYEDRSYTFILKTPPASVLLANAAKVKKGSATPNRVNVGSVTKAQLEEIANIKLPDLNTTEISSAIRIVEGTARNMGITV 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_THEP12.181e-4667.9450S ribosomal protein L11 OS=Thermotoga petrophila... [more]
RL11_CLOAB2.181e-4668.1850S ribosomal protein L11 OS=Clostridium acetobuty... [more]
RL11_THESQ3.721e-4667.9450S ribosomal protein L11 OS=Thermotoga sp. (strai... [more]
RL11_THEMA3.721e-4667.9450S ribosomal protein L11 OS=Thermotoga maritima G... [more]
RK11_ODOSI3.721e-4670.4550S ribosomal protein L11, chloroplastic OS=Odonte... [more]
RL11_FRASC1.083e-4568.9450S ribosomal protein L11 OS=Frankia sp. (strain C... [more]
RL11_CLOB81.083e-4566.1750S ribosomal protein L11 OS=Clostridium beijerinc... [more]
RK11_PHATR1.083e-4570.4550S ribosomal protein L11, chloroplastic OS=Phaeod... [more]
RL11_THENN3.150e-4567.1850S ribosomal protein L11 OS=Thermotoga neapolitan... [more]
RK11_THAPS3.150e-4569.7050S ribosomal protein L11, chloroplastic OS=Thalas... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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