FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PHOLL (50S ribosomal protein L11 OS=Photorhabdus luminescens subsp. laumondii GN=rplK PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.467e-34
Identity = 73/133 (54.89%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T   + G  IPV ITVY DRSFTF+ KTPPA+VLL KAAG++ GS  P + +VGK+T  Q+R IA  K  D+   S+++ MR I GTA +MG+ ++
Sbjct:    9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYSDRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTSAQIREIAETKAADMTGASVDAMMRSIEGTARSMGLVVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SULMW (50S ribosomal protein L11 OS=Sulcia muelleri (strain GWSS) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 68/132 (51.52%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKL ++ G A PAPP+GPALG+ GVNIM FCK YN  T    G ++PV IT+Y+D+SF+FI+K PP S  LL+   ++KGSK+  + +VGKIT+ ++ +IA  K+ D+NC +I+SA+ ++AGTA +MGI+I
Sbjct:    8 IIKLQIKGGLANPAPPIGPALGSAGVNIMDFCKQYNFSTQKSKGKLLPVIITIYNDKSFSFIIKEPPVSKQLLELCKLDKGSKESNKIKVGKITLAKIESIAKNKIIDMNCFNIKSAISMVAGTARSMGIEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_POLSQ (50S ribosomal protein L11 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 72/133 (54.14%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PPVGPALG +G+NIM FCK +NA+T   + G  IPV IT + D+SFTFI+KTPPA++++ KAA +EKGS  P   +VGKIT  Q   IA  K+PDL    +++A+R IAG+A +MGI ++
Sbjct:    9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAQTQSMEPGLPIPVVITAFADKSFTFIMKTPPATIMIKKAAKIEKGSPRPHTDKVGKITRAQAEEIAKAKMPDLTAADMDAAVRTIAGSARSMGITVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CAMLR (50S ribosomal protein L11 OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 72/131 (54.96%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL + A KA P+PPVGPALG +GVNIM FCK +N RT D AG+ IPV ITVY D+SFTFI K PPA+ L+ KAAG+ KG+ +P + +VGK+T  Q+  I  +K+ D+N    E A +II G+A +MG++I
Sbjct:    9 IKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNERTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGADNPLKNKVGKLTKAQVLEIVDKKIADMNTKDREQAAKIIMGSARSMGVEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_BURM1 (50S ribosomal protein L11 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PPVGPALG +G+NIM FCK +NA+T   + G  +PV IT Y D+SFTF++KTPPA+VL+ KAA V+KGS  P   +VG IT  Q   IA  K+PDL    +++A+R IAG+A +MGI ++
Sbjct:    9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAQTQGMEPGLPVPVVITAYADKSFTFVMKTPPATVLIKKAAKVDKGSSKPHTDKVGSITRAQAEEIAKTKMPDLTAADLDAAVRTIAGSARSMGITVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_AZOPC (50S ribosomal protein L11 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplK PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 64/131 (48.85%), Postives = 98/131 (74.81%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++L +  G A P+PPVGPALG+KGVNIM FCK +NA+T D+ G ++PV +T Y D+SF F++K PP +V LL+   ++ GS +P ++++ +IT EQ++AIA  K+ DLNC S+E A++++ GTA +MGI +
Sbjct:    9 LRLQIRGGAANPSPPVGPALGSKGVNIMEFCKQFNAKTQDRIGKLLPVVVTYYVDKSFDFVIKNPPVAVQLLEIVKLKSGSAEPNRKKIAEITWEQVKAIAEYKMADLNCFSVEKAIQMVIGTAKSMGIHV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11B_BACHD (50S ribosomal protein L11-2 OS=Bacillus halodurans GN=rplK2 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++ + LEAGKA PA  VG  L   G+N++ FC  YN  T  + G V+P +IT+Y+DRSF   LKTPPA+ LL K AGVEKG+  P ++ VG IT +QLR IA  KLPDLN TSI+ AM+IIAGTA NMGI+I+
Sbjct:    8 IVTINLEAGKANPAK-VGKDLAPTGINLLGFCNQYNEMTKLQLGLVVPAKITIYEDRSFNVKLKTPPAAFLLKKYAGVEKGAAQPGKEVVGSITTQQLRTIAEIKLPDLNTTSIDRAMKIIAGTARNMGINIE 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SODGM (50S ribosomal protein L11 OS=Sodalis glossinidius (strain morsitans) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 73/133 (54.89%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T   + G  IPV ITVY DRSFTF+ KTPPA+VLL KAAG++ GS  P + +VGK+T  Q+R IA  K  D+    +E+  R IAGTA +MG+ ++
Sbjct:    9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTESIEKGLPIPVVITVYSDRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTSAQVREIAETKAADMTGADVEAMSRSIAGTARSMGLVVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_BURPP (50S ribosomal protein L11 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 73/133 (54.89%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNART-ADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PPVGPALG +G+NIM FCK +NA+T A + G   PV IT + D+SFTF+LKTPPA+VL+ KAA ++KGS  P   +VGKIT  Q   IA  K+PDL    +++A+R IAG+A +MGI ++
Sbjct:    9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAQTQALEPGLPTPVVITAFADKSFTFVLKTPPATVLIKKAAKIDKGSSKPHTDKVGKITRAQAEDIAKTKMPDLTAADLDAAVRTIAGSARSMGITVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_BORPD (50S ribosomal protein L11 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplK PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.502e-34
Identity = 73/133 (54.89%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PP+GPALG +G+NIM FCK +NA+T   + G  IPV IT + D+SFTFI+KTPPA+VL+ KAAGV+KGS  P   +VG +T  Q   IA  K PDL    +E+A+R IAG+A +MGI ++
Sbjct:    9 IKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKAAGVQKGSAKPHTDKVGTLTRAQAEEIAKTKEPDLTAADLEAAVRTIAGSARSMGITVE 141          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_PHOLL1.467e-3454.8950S ribosomal protein L11 OS=Photorhabdus luminesc... [more]
RL11_SULMW1.915e-3451.5250S ribosomal protein L11 OS=Sulcia muelleri (stra... [more]
RL11_POLSQ1.915e-3454.1450S ribosomal protein L11 OS=Polynucleobacter sp. ... [more]
RL11_CAMLR1.915e-3454.9650S ribosomal protein L11 OS=Campylobacter lari (s... [more]
RL11_BURM11.915e-3454.1450S ribosomal protein L11 OS=Burkholderia multivor... [more]
RL11_AZOPC1.915e-3448.8550S ribosomal protein L11 OS=Azobacteroides pseudo... [more]
RL11B_BACHD1.915e-3456.3950S ribosomal protein L11-2 OS=Bacillus halodurans... [more]
RL11_SODGM2.502e-3454.8950S ribosomal protein L11 OS=Sodalis glossinidius ... [more]
RL11_BURPP2.502e-3454.8950S ribosomal protein L11 OS=Burkholderia phytofir... [more]
RL11_BORPD2.502e-3454.8950S ribosomal protein L11 OS=Bordetella petrii (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
back to top