FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_TREPA (50S ribosomal protein L11 OS=Treponema pallidum GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 70/133 (52.63%), Postives = 100/133 (75.19%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL   AGKATPAPPVGPALG  GV+   F + +N RT   + G V+PV +TVY D+SF+F+LKTPPA+VL+ KA G+EKGS +  +Q+V ++++ QL  IA  KLPD++  ++++A RIIAGTA +MG++++
Sbjct:   11 IKLQCPAGKATPAPPVGPALGPHGVSAPQFVQQFNDRTKSMEPGLVVPVVVTVYSDKSFSFVLKTPPAAVLIRKACGIEKGSTNSVKQKVARLSLAQLTEIAQVKLPDMSALTLDAAKRIIAGTARSMGVEVE 143          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_RHOPS (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTA-DKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AG A P+PP+GPALG +G+NIM FCK +NA+T  ++    IPV IT+Y DRSFTF LKTPP S  L +AA ++ GSK P +   GK+T  Q+R IA +K+ DLNC SI+SAMR++ G+A +MG+ ++
Sbjct:    9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFTFELKTPPMSFFLKQAAKIQSGSKLPGRDSAGKVTTAQVREIAEKKMKDLNCDSIDSAMRMVEGSARSMGLQVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_RHOP2 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTA-DKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AG A P+PP+GPALG +G+NIM FCK +NA+T  ++    IPV IT+Y DRSFTF +KTPP S  L +AA ++ GSK P +   GK+T  Q+R IA +K+ DLNC SIESAMR++ G+A +MG+ ++
Sbjct:    9 LKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAQTQKEEKNTPIPVVITIYADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDSAGKVTSAQVREIAEKKMKDLNCDSIESAMRMVEGSARSMGLQVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_RHILO (50S ribosomal protein L11 OS=Rhizobium loti GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 65/132 (49.24%), Postives = 99/132 (75.00%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +KL + AG ATP+PP+GPALG +G+NIM FCK +NA+T + + G  +PV IT Y D+SFTF++KTPP S  L KAA ++ GSK+P + + G ++ +++R IAT K+ DLN   +E+AMR++ G+A +MG+++
Sbjct:    9 LKLQVSAGSATPSPPIGPALGQRGINIMEFCKAFNAQTQEMEKGSPVPVVITYYQDKSFTFVMKTPPVSYFLKKAANLKSGSKEPGKVKAGTVSRDKVREIATAKMKDLNANDVEAAMRMVEGSARSMGLEV 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PHEZH (50S ribosomal protein L11 OS=Phenylobacterium zucineum (strain HLK1) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 71/132 (53.79%), Postives = 96/132 (72.73%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTA-DKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL + AG ATP+PP+GPALG +GVNIM FCK++NART  ++ G  +P  ITVY D+SFTF+ KTPPA+  + +A G++ GS    ++ VGKIT  QLR IA +K+ DLN   +E+A RII G+A +MG+ I
Sbjct:    9 IKLQVPAGAATPSPPIGPALGQRGVNIMGFCKEFNARTEKEQKGTPLPTVITVYQDKSFTFVTKTPPATYYIKQAVGLQSGSGKTGRETVGKITRAQLREIAEKKMKDLNANDVEAAARIIEGSARSMGLQI 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_PECCP (50S ribosomal protein L11 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AG A P+PPVGPALG +GVNIM FCK +NA+T   + G  IPV ITVY DRSFTF+ KTPPA+VLL KAAG++ GS  P + +VGK+T  Q+R IA  K  D+  + +++  R IAGTA +MG+ ++
Sbjct:    9 VKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTESVEKGLPIPVVITVYSDRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKVTSAQVREIAETKAADMTGSDVDAMARSIAGTARSMGLVVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_METFK (50S ribosomal protein L11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PPVGPALG +G+NIM FCK +NA T   + G  IPV IT + D+SFTF++KTPPA++L+ KAA ++KGS  P   +VGKIT  Q   IA  K PDL    +++A+R IAG+A +MGI+++
Sbjct:    9 IKLQIPAGKANPSPPVGPALGQRGLNIMEFCKAFNAATQSMEPGLPIPVVITAFADKSFTFVMKTPPATILIKKAAKIDKGSPRPHTDKVGKITRAQAEEIAKTKAPDLTAADLDAAVRTIAGSARSMGIEVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_DECAR (50S ribosomal protein L11 OS=Dechloromonas aromatica (strain RCB) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 71/133 (53.38%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PP+GPALG +G+NIM FCK +NA+T   + G  IPV IT + D+SFTF++KTPPA++L+ KAAG++ GS  P   +VGKIT  Q   IA  K PDL    +E+A+R IAG+A +MGI ++
Sbjct:    9 IKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAQTQGVEPGLPIPVVITAFADKSFTFVMKTPPATILIKKAAGIKSGSAKPHTDKVGKITRAQCEEIAKTKSPDLTAADMEAAIRTIAGSARSMGITVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_BORA1 (50S ribosomal protein L11 OS=Bordetella avium (strain 197N) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.267e-34
Identity = 72/133 (54.14%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            IKL + AGKA P+PP+GPALG +G+NIM FCK +NA+T   + G  IPV IT + D+SFTFI+KTPPA+VL+ KAAGV+KGS  P   +VG +T  Q   IA  K PDL    +++A+R IAG+A +MGI ++
Sbjct:    9 IKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGMEPGLPIPVVITAFADKSFTFIMKTPPATVLIKKAAGVQKGSPKPHTDKVGTLTRAQAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVE 141          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_XANCB (50S ribosomal protein L11 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rplK PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTAD-KAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKL ++AG+A PAPPVGPALG +G+NIM FCK +NA T+  + G   PV IT Y DR+FTFI K+ PASVLL KAAGV  GSK P   +VGK+T +QL  IA  K  DL    +E+A+R IAG+A +MG+ ++
Sbjct:    8 LIKLQVKAGQANPAPPVGPALGQRGLNIMEFCKAFNAATSKLEPGLPTPVIITAYSDRTFTFITKSTPASVLLKKAAGVSSGSKRPNTDKVGKVTRKQLEEIAKVKEADLTAAELEAAVRTIAGSARSMGLTVE 141          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_TREPA4.267e-3452.6350S ribosomal protein L11 OS=Treponema pallidum GN... [more]
RL11_RHOPS4.267e-3452.6350S ribosomal protein L11 OS=Rhodopseudomonas palu... [more]
RL11_RHOP24.267e-3452.6350S ribosomal protein L11 OS=Rhodopseudomonas palu... [more]
RL11_RHILO4.267e-3449.2450S ribosomal protein L11 OS=Rhizobium loti GN=rpl... [more]
RL11_PHEZH4.267e-3453.7950S ribosomal protein L11 OS=Phenylobacterium zuci... [more]
RL11_PECCP4.267e-3454.1450S ribosomal protein L11 OS=Pectobacterium caroto... [more]
RL11_METFK4.267e-3453.3850S ribosomal protein L11 OS=Methylobacillus flage... [more]
RL11_DECAR4.267e-3453.3850S ribosomal protein L11 OS=Dechloromonas aromati... [more]
RL11_BORA14.267e-3454.1450S ribosomal protein L11 OS=Bordetella avium (str... [more]
RL11_XANCB5.573e-3455.9750S ribosomal protein L11 OS=Xanthomonas campestri... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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