FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_SYMTH (50S ribosomal protein L11 OS=Symbiobacterium thermophilum GN=rplK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 87/133 (65.41%), Postives = 107/133 (80.45%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKLAL AGKATPAPPVGPALGA GVNIMAFCK+YN RT D+ G VIPVEITVY+DRSFTFILKTPP +VL+ KA G+E  S  P +Q+VGK+T  Q+  IA  K+PDLN   +E+A R++ GTA +MG+D++
Sbjct:    8 VIKLALPAGKATPAPPVGPALGAHGVNIMAFCKEYNERTKDQVGLVIPVEITVYEDRSFTFILKTPPTAVLIKKALGIETASGVPNKQKVGKLTDAQVEEIAKIKMPDLNANDLEAAKRMVRGTARSMGVDVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLONN (50S ribosomal protein L11 OS=Clostridium novyi (strain NT) GN=rplK PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 89/133 (66.92%), Postives = 110/133 (82.71%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKATPAPPVGPALG  GVNIMAFCK+YNA+TA++AG  IPV I+VY DRSF+FILKTPPA+VL+ KAAG++ GS +P + +VGKIT  QL+ IA  K+PDLN  S+ESAM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKATPAPPVGPALGQHGVNIMAFCKEYNAKTANQAGMTIPVIISVYQDRSFSFILKTPPAAVLIKKAAGLDSGSGEPNKTKVGKITKAQLKEIAETKMPDLNAGSVESAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THETN (50S ribosomal protein L11 OS=Thermoanaerobacter tengcongensis GN=rplK PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 90/132 (68.18%), Postives = 107/132 (81.06%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++K+ L AGKATPAPPVG ALG  GVNIMAFCK++N RTA  AG +IPV IT+Y DRSF+FI KTPPASVLL KAAG+E GS  P +Q+VGKIT +QLR IA  K+ DLN T IE+AMR+IAGTA +MGI+I
Sbjct:    8 VVKIQLPAGKATPAPPVGTALGPHGVNIMAFCKEFNERTAKDAGLIIPVVITIYSDRSFSFITKTPPASVLLKKAAGIESGSPQPNKQKVGKITKQQLREIAEIKMRDLNTTDIEAAMRMIAGTARSMGIEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_FRAAA (50S ribosomal protein L11 OS=Frankia alni (strain ACN14a) GN=rplK PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.563e-44
Identity = 89/132 (67.42%), Postives = 106/132 (80.30%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IKL + AGKATPAPPVGPALG  GVNIM FCK YNA T  +AG V+PVEITVY+DRSFTF+ KTPPA+ L+LKAAGVEKGS  P + +V K+T  Q+R IA  KLPDLN T+IE+A +IIAGTA +MGI +
Sbjct:   11 IIKLQINAGKATPAPPVGPALGQHGVNIMEFCKQYNAATESQAGNVVPVEITVYEDRSFTFVTKTPPAARLILKAAGVEKGSGTPHRDKVAKLTPAQVREIAQTKLPDLNATTIEAAEKIIAGTARSMGITV 142          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_FUSNN (50S ribosomal protein L11 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplK PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.042e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA PAPPVGPALG  GVNIM FCK +NA+T DKAG++IPVEI+VY DRSFTFILKTPPAS LL KAAG+  G+K+ K++  GKIT  +L+ +A  K+PDLN +S+E+AM+IIAG+A +MGI I+
Sbjct:    8 IIKLQLPAGKANPAPPVGPALGQHGVNIMEFCKAFNAKTQDKAGWIIPVEISVYSDRSFTFILKTPPASDLLKKAAGITSGAKNSKKEVAGKITTAKLKELAETKMPDLNASSVETAMKIIAGSARSMGIKIE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEPX (50S ribosomal protein L11 OS=Thermoanaerobacter sp. (strain X514) GN=rplK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 89/132 (67.42%), Postives = 107/132 (81.06%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++K+ L AGKATPAPPVG ALG  GVNIMAFCK++N RTA  AG +IPV IT+Y DRSF+FI KTPPA+VLL KAAG+E GS  P +Q+VGKIT EQLR IA  K+ DLN + IE+AMR+IAGTA +MGI+I
Sbjct:    8 VVKIQLPAGKATPAPPVGTALGPHGVNIMAFCKEFNERTAKDAGLIIPVVITIYADRSFSFITKTPPAAVLLKKAAGIESGSPQPNKQKVGKITREQLREIAEIKMKDLNASDIEAAMRMIAGTARSMGIEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEP3 (50S ribosomal protein L11 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 89/132 (67.42%), Postives = 107/132 (81.06%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++K+ L AGKATPAPPVG ALG  GVNIMAFCK++N RTA  AG +IPV IT+Y DRSF+FI KTPPA+VLL KAAG+E GS  P +Q+VGKIT EQLR IA  K+ DLN + IE+AMR+IAGTA +MGI+I
Sbjct:    8 VVKIQLPAGKATPAPPVGTALGPHGVNIMAFCKEFNERTAKDAGLIIPVVITIYADRSFSFITKTPPAAVLLKKAAGIESGSPQPNKQKVGKITREQLREIAEIKMKDLNASDIEAAMRMIAGTARSMGIEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_GEOTN (50S ribosomal protein L11 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 86/133 (64.66%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIMAFCK++NARTAD+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + +V  I  +++R IA  K+PDLN  SIE+AMR++ GTA +MGI I+
Sbjct:    8 IVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMVEGTARSMGIVIE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_GEOSW (50S ribosomal protein L11 OS=Geobacillus sp. (strain WCH70) GN=rplK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 86/133 (64.66%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIMAFCK++NARTAD+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + +V  I  +++R IA  K+PDLN  SIE+AMR++ GTA +MGI I+
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAEMKMPDLNAASIEAAMRMVEGTARSMGIVIE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_GEOKA (50S ribosomal protein L11 OS=Geobacillus kaustophilus GN=rplK PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIMAFCK++NARTAD+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + +V  I  +++R IA  K+PDLN  SIE+AMR+I GTA +MGI I+
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVIE 140          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_SYMTH7.017e-4565.4150S ribosomal protein L11 OS=Symbiobacterium therm... [more]
RL11_CLONN7.017e-4566.9250S ribosomal protein L11 OS=Clostridium novyi (st... [more]
RL11_THETN1.197e-4468.1850S ribosomal protein L11 OS=Thermoanaerobacter te... [more]
RL11_FRAAA1.563e-4467.4250S ribosomal protein L11 OS=Frankia alni (strain ... [more]
RL11_FUSNN2.042e-4465.4150S ribosomal protein L11 OS=Fusobacterium nucleat... [more]
RL11_THEPX3.482e-4467.4250S ribosomal protein L11 OS=Thermoanaerobacter sp... [more]
RL11_THEP33.482e-4467.4250S ribosomal protein L11 OS=Thermoanaerobacter ps... [more]
RL11_GEOTN3.482e-4464.6650S ribosomal protein L11 OS=Geobacillus thermoden... [more]
RL11_GEOSW3.482e-4464.6650S ribosomal protein L11 OS=Geobacillus sp. (stra... [more]
RL11_GEOKA3.482e-4465.4150S ribosomal protein L11 OS=Geobacillus kaustophi... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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