FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOBM (50S ribosomal protein L11 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOBL (50S ribosomal protein L11 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOBK (50S ribosomal protein L11 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOBJ (50S ribosomal protein L11 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOBH (50S ribosomal protein L11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOB6 (50S ribosomal protein L11 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOB1 (50S ribosomal protein L11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 87/133 (65.41%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIM FCK++NA+TA++AG +IPV ITVY DRSF+FILKTPPA+VLL KAAG+E GS  P + +V K+T +Q+R IA  K+PDLN  SIE+AM +IAGTA +MGI ++
Sbjct:    8 MIKLQLPAGKASPAPPVGPALGQHGVNIMGFCKEFNAKTANQAGLIIPVVITVYQDRSFSFILKTPPAAVLLKKAAGIESGSGVPNKTKVAKVTKDQIREIAETKMPDLNAGSIETAMSMIAGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_FRASN (50S ribosomal protein L11 OS=Frankia sp. (strain EAN1pec) GN=rplK PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            LIKL + AGKATPAPPVGPALG  GVNIM FCK YNA T  + G V+PVEITVYDDRSFTF+ KTPPA+ L+LKAAGV+KGS  P + +V K+T  Q+R IA  KLPDLN  SIE+A +IIAGTA +MGI +
Sbjct:   11 LIKLQINAGKATPAPPVGPALGQHGVNIMEFCKQYNAATESQTGNVVPVEITVYDDRSFTFVTKTPPAARLILKAAGVDKGSGTPHRVKVAKLTPAQVREIAQTKLPDLNANSIEAAEKIIAGTARSMGITV 142          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RK11_CYAPA (50S ribosomal protein L11, cyanelle OS=Cyanophora paradoxa GN=rpl11 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 87/132 (65.91%), Postives = 105/132 (79.55%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +IK+ L AGKATPAPPVGPALG  GV+ + FCK+YNA+TADK G VIP EITVYDDRS++F+LKTPPASVL+ KAA VEKGS +P +++VG IT  QL  IA  K PDLN  ++E+A RI+ GTA NMGI I
Sbjct:    8 IIKIVLPAGKATPAPPVGPALGPYGVSSVNFCKEYNAKTADKGGLVIPAEITVYDDRSYSFVLKTPPASVLIAKAASVEKGSGEPNRKKVGSITKAQLEQIAKVKFPDLNTQNLEAASRIVEGTARNMGITI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THEAB (50S ribosomal protein L11 OS=Thermosipho africanus (strain TCF52B) GN=rplK PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.013e-43
Identity = 85/131 (64.89%), Postives = 107/131 (81.68%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++L LEAGKATPAPPVGPALG +GVN+M FCK +NA TADKAG +IPV ITVY+DRSFTFI KTPPAS LL KAA +  GS++PK++ VGK+T +Q++ IA  K+ DLN   IE+AM+II GTA +MGI++
Sbjct:    9 VRLQLEAGKATPAPPVGPALGQRGVNLMEFCKKFNAATADKAGMIIPVIITVYEDRSFTFITKTPPASFLLKKAAKLNSGSQEPKRKMVGKVTRDQIKEIAEIKMKDLNANDIEAAMKIIEGTAKSMGIEV 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_CLOBM4.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBL4.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBK4.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBJ4.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOBH4.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOB64.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_CLOB14.548e-4465.4150S ribosomal protein L11 OS=Clostridium botulinum... [more]
RL11_FRASN5.940e-4467.4250S ribosomal protein L11 OS=Frankia sp. (strain E... [more]
RK11_CYAPA7.758e-4465.9150S ribosomal protein L11, cyanelle OS=Cyanophora ... [more]
RL11_THEAB1.013e-4364.8950S ribosomal protein L11 OS=Thermosipho africanus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
back to top