FC923133

Overview
NameFC923133
Unique NameFC923133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9232 contig Ccv1_Contig9232:610..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STRAW (50S ribosomal protein L11 OS=Streptomyces avermitilis GN=rplK PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.013e-43
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKL ++AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + +V KIT  Q+R IAT KLPDLN   +++A +IIAGTA +MGI ++
Sbjct:   11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITQAQVREIATTKLPDLNANDLDAASKIIAGTARSMGITVE 143          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_BACST (50S ribosomal protein L11 (Fragment) OS=Bacillus stearothermophilus GN=rplK PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.013e-43
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +KL + AGKA PAPPVGPALG  GVNIMAFCK++NARTAD+AG +IPVEITV++DRSFTFI KTPPA+VLL KAAG+E GS +P + +V  I  +++R IA  K+PDLN  SIE+AMR+I GTA +MGI ++
Sbjct:    1 MKLQIPAGKANPAPPVGPALGQAGVNIMAFCKEFNARTADQAGLIIPVEITVFEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNAASIEAAMRMIEGTARSMGIVVE 132          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THELT (50S ribosomal protein L11 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplK PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 83/131 (63.36%), Postives = 108/131 (82.44%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            +KL L AGKATPAPPVGPALG +GVNIM FCK +NA TADKAG ++PV ITVY+DRSF+F++KTPPAS LL +AAG+EKGS +PK++ VGK+T +QL  IA  K+PD+    +E+A++I+ GTA +MGI+I
Sbjct:    9 VKLQLPAGKATPAPPVGPALGQRGVNIMEFCKRFNAETADKAGMILPVIITVYEDRSFSFVVKTPPASFLLKRAAGLEKGSGEPKRKNVGKVTRKQLEEIAKIKMPDITANDLEAAVKIVEGTAKSMGIEI 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STACT (50S ribosomal protein L11 OS=Staphylococcus carnosus (strain TM300) GN=rplK PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            ++KL + AGKA PAPPVGPALG  GVNIM FCK++NART ++AG +IPVEI+VY+DRSFTFI KTPPA VLL KAAGVEKGS +P + +V  +T +Q+R IA  K+PDLN    E+AMRII GTA +MGI ++
Sbjct:    8 VVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISVYEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKNKVATVTKDQVREIAQTKMPDLNAADEEAAMRIIEGTARSMGITVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_CLOTE (50S ribosomal protein L11 OS=Clostridium tetani GN=rplK PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 85/133 (63.91%), Postives = 108/133 (81.20%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            +IKL L AGKA+PAPPVGPALG  GVNIMAFCK++N +TA +AG +IPV ITVY DRSF+FILKTPPA+VL+ KA G+E GS  P + +V KIT EQL+ IA  K+PDLN  S+E+AMR++AGTA +MG+ ++
Sbjct:    8 MIKLQLAAGKASPAPPVGPALGQHGVNIMAFCKEFNEKTAKQAGLIIPVVITVYQDRSFSFILKTPPAAVLIKKAVGIESGSGVPNKTKVAKITKEQLKEIAEMKMPDLNAGSVEAAMRMVAGTARSMGVTVE 140          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STRVN (50S ribosomal protein L11 OS=Streptomyces violaceoruber GN=rplK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKL ++AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + +V KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STRLI (50S ribosomal protein L11 OS=Streptomyces lividans GN=rplK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKL ++AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + +V KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_STRCO (50S ribosomal protein L11 OS=Streptomyces coelicolor GN=rplK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 85/133 (63.91%), Postives = 106/133 (79.70%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 651
            LIKL ++AG A PAPPVGPALG  GVNIM FCK YNA T  + G+VIPVEITVY+DRSFTFI KTPPA+ ++LKAAGVEKGS +P + +V KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   11 LIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_KOSOT (50S ribosomal protein L11 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplK PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 88/131 (67.18%), Postives = 104/131 (79.39%), Query Frame = 1
Query:  256 IKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            IKL LEAGKATPAPPVGPALG  GVNIM FCK +NA TADK G V P  ITVY DRSFTF LKTPPAS L+LKAAG++KGS +P + +VGKIT  Q+  IA  K+PDLN  ++E+AM+II GTA NMG+++
Sbjct:    9 IKLQLEAGKATPAPPVGPALGQHGVNIMDFCKKFNAVTADKPGMVFPAVITVYADRSFTFELKTPPASFLILKAAGIKKGSGEPNKVKVGKITKAQVEEIAKIKMPDLNARTLEAAMKIIEGTARNMGVEV 139          
BLAST of FC923133 vs. ExPASy Swiss-Prot
Match: RL11_THERP (50S ribosomal protein L11 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=rplK PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 83/132 (62.88%), Postives = 108/132 (81.82%), Query Frame = 1
Query:  253 LIKLALEAGKATPAPPVGPALGAKGVNIMAFCKDYNARTADKAGYVIPVEITVYDDRSFTFILKTPPASVLLLKAAGVEKGSKDPKQQQVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 648
            ++KL L AGKATPAPPVGPALG  GV IM F K+YN +TA  AG +IPV +T+Y+DRSFTF+LKTPPA+ LL +AAG+EKG+ DPK+Q+VG++T EQ+R IA  K+PDLN   +E+AMR+I GTA +MGI++
Sbjct:    8 IVKLQLPAGKATPAPPVGPALGQHGVPIMNFVKEYNEKTAHLAGQIIPVVVTIYEDRSFTFVLKTPPAADLLRRAAGIEKGAADPKRQKVGRVTREQIREIAQLKMPDLNARDLEAAMRMIEGTARSMGIEV 139          
The following BLAST results are available for this feature:
BLAST of FC923133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL11_STRAW1.013e-4365.4150S ribosomal protein L11 OS=Streptomyces avermiti... [more]
RL11_BACST1.013e-4365.1550S ribosomal protein L11 (Fragment) OS=Bacillus s... [more]
RL11_THELT1.323e-4363.3650S ribosomal protein L11 OS=Thermotoga lettingae ... [more]
RL11_STACT1.323e-4363.9150S ribosomal protein L11 OS=Staphylococcus carnos... [more]
RL11_CLOTE1.323e-4363.9150S ribosomal protein L11 OS=Clostridium tetani GN... [more]
RL11_STRVN1.728e-4363.9150S ribosomal protein L11 OS=Streptomyces violaceo... [more]
RL11_STRLI1.728e-4363.9150S ribosomal protein L11 OS=Streptomyces lividans... [more]
RL11_STRCO1.728e-4363.9150S ribosomal protein L11 OS=Streptomyces coelicol... [more]
RL11_KOSOT1.728e-4367.1850S ribosomal protein L11 OS=Kosmotoga olearia (st... [more]
RL11_THERP2.257e-4362.8850S ribosomal protein L11 OS=Thermomicrobium roseu... [more]

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Properties
Property NameValue
Genbank descriptionC31701D11EF StrClemenN Citrus clementina cDNA clone C31701D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923133 ID=FC923133; Name=FC923133; organism=Citrus clementina; type=EST; length=710bp
GAGTGGATTCGAGGTTCAATGGCTTCCTCTCTATCCACTTCAACGAGTCT
TCAAAATGCTAGTCAGCAGCTTTCGTGCTCTTTATTTCCTTCAGCCATCA
ACTTATCCTCAAACTCTAATGTCTCCCTCCCATTTTACGACAATAAAGTT
AAACCATCCCCACTCCTCTCTTCAACTCCAAGATTTCTCACTGTCATTGC
CATGGCTCCTCCTAAACCCGGTGGCAAAGCCAAAGCCAAGAAAGTGGTGG
GTTTGATAAAGCTGGCTCTAGAGGCAGGAAAGGCCACACCTGCGCCGCCC
GTGGGGCCAGCCCTTGGTGCTAAGGGTGTAAATATCATGGCTTTTTGTAA
GGATTATAATGCTAGAACTGCTGATAAAGCCGGTTACGTTATTCCAGTCG
AAATTACCGTTTACGATGATAGGAGCTTCACTTTTATTCTTAAGACGCCG
CCCGCGTCAGTTTTGCTCCTTAAGGCTGCTGGGGTGGAGAAGGGTTCAAA
AGATCCAAAGCAACAGCAAGTGGGGAAGATCACCATTGAACAATTGCGGG
CCATTGCCACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCA
GCAATGAGAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGA
CCCTCCAGTTCTTGAGACCAAAAGAANGACTTTGATTATTCATTGTTGCC
TTGATTTGCT
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