FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:116..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.976e-78
Identity = 142/177 (80.23%), Postives = 161/177 (90.96%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 290.041 bits (741), Expect = 8.976e-78
Identity = 142/177 (80.23%), Postives = 161/177 (90.96%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+    F+ETSAL+S NVE AF  +LT+IYR+VS+K +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 4.455e-77
Identity = 141/177 (79.66%), Postives = 160/177 (90.40%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            DD+YDYLFKVVLIGDSGVGKSNLLSRFTRNEF+LESKSTIGVEFATRSI+ D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A AFAE+    F+ETSAL+  NVE AF  +LT+IYR+VS+K +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQM 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.432e-76
Identity = 141/212 (66.51%), Postives = 171/212 (80.66%), Query Frame = 3
Query:  105 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMCS 740
            A R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM+ GNK+DL+HLRAVS ED  A AE+E   F+ETSALE++N+E AF  +LT+IY ++S+KAL   +  + LP     +   D  +  R+S CS
Sbjct:    2 ANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADASANQRRSCCS 213          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.432e-76
Identity = 136/181 (75.14%), Postives = 163/181 (90.06%), Query Frame = 3
Query:  105 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            A R D++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR+++ + + VKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TFENV RWLKELRDH DSNIVIML+GNK DL+HLRAV+TEDA ++AE+E   F+ETSALE++NVE AF  +L+++YR++S+K++
Sbjct:    2 ARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSI 182          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.530e-74
Identity = 136/182 (74.73%), Postives = 159/182 (87.36%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            +D+YDYLFK VLIGDSGVGKSNLL RFTRNEF++ESKSTIGVEFATR+I  D+K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+T+  +F+NV RWLKELR+H DSNIVIMLVGNK DL HLRAVSTE+A AFA   N  F+ETSA+++ NVE AF  VLT+I+R+VS ++LE GDD
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.021e-74
Identity = 133/181 (73.48%), Postives = 158/181 (87.29%), Query Frame = 3
Query:  105 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            A+R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM+ GNK+DL HLRAVS +D  A +E+E   F+ETSALE+ N+E AF  +LT+IY +VS+KAL
Sbjct:    2 AHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 182          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.135e-72
Identity = 138/214 (64.49%), Postives = 170/214 (79.44%), Query Frame = 3
Query:  105 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPA--ALPRDRQIMWN*DDVSAVRKSMCS 740
            A R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+++ + K VKAQIWDTAGQERYRAITSAYYRGAVGALL YD+T+  TF+NV+RWL+ELRDH DSNIVI+L GNK+DL+HLRAVS +D  A  ++E   F+ETSALE++NV+ AF  +LT IY ++S+KAL   +  A  ALP     +   D+ + V++  CS
Sbjct:    2 ANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCCS 215          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 271.937 bits (694), Expect = 2.529e-72
Identity = 138/213 (64.79%), Postives = 166/213 (77.93%), Query Frame = 3
Query:  108 YRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL---EIGDDPAALPRDRQIMWN*DDVSAVRKSMC 737
            +R D +YDYLFK+VLIGDSGVGKSN+LSRFTRNEF LESKSTIGVEFATR+ + + K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWL+ELRDH DSNIVIM+ GNK+DL HLR+V+ ED  + AE+E   F+ETSALE+ NVE AF  +L +IY ++S+KAL   E     +A+P     + N DD S   K  C
Sbjct:    3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTI-NVDDTSGGAKRAC 214          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.640e-71
Identity = 129/187 (68.98%), Postives = 160/187 (85.56%), Query Frame = 3
Query:  111 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAA 671
            R D +Y YLFK+VLIGDSGVGKSN+LSRFTRN FSL+SKSTIGVEFAT+S++ + K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  +F+NV RWL+ELRDH DS+IVIM+VGNK+DL HLRAVS ++  A AE+E  FF+ETSA+E++NVE AF  ++T++Y +V+RKAL   +  AA
Sbjct:    4 RVDHEYSYLFKMVLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAA 190          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_CHICK8.976e-7880.23Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA8.976e-7880.23Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11A_BOVIN4.455e-7779.66Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RB2BV_BETVU6.432e-7666.51Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2A_ARATH6.432e-7675.14Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT3_SCHPO3.530e-7474.73GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RB11C_LOTJA6.021e-7473.48Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC1.135e-7264.49Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2C_ARATH2.529e-7264.79Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RGP2_ORYSJ1.640e-7168.98Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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