FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:116..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.440e-60
Identity = 114/175 (65.14%), Postives = 142/175 (81.14%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            ++DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++      VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct:    6 EEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.440e-60
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 3
Query:  129 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            +YLFK+V+IGDS VGKSNLLSR+ RNEFS  SK+TIGVEF T+S+  + K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFE+V RWL EL+ H+D+ +  MLVGNK DL ++RAVS E+  A AE E  FF+ETSAL+S NV+ AF  V+  IY  VSRK L
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQL 182          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.440e-59
Identity = 120/213 (56.34%), Postives = 151/213 (70.89%), Query Frame = 3
Query:  114 ADDDY---DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALPRDRQIMWN*DDVSAVRKSMCSK 743
            +DDD    +YLFK+V+IGDS VGKSNLL+R+ RNEF+  SK+TIGVEF T+S+  D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TFENV RWL EL  H+D+ +  ML+GNK DL  +RAVS E+  + AE E  FFMETSAL+S NV+ AF  V+ +IY  +SRK L        L  +R  +   ++      S CS+
Sbjct:    2 SDDDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRVSLVKNENEGTKTFSCCSR 214          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.688e-57
Identity = 105/182 (57.69%), Postives = 141/182 (77.47%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            +++ +YLFK+V+IGDS VGKSNLL+RFTRNEF+ ++K+TIGV+F T+SI  D+K + AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T  ++F+NV RWL ELR+  + +I+IM+VGNK+DL   R V T++A AFAE     F+ETSAL S NV  +F  +LT IY +VS K   + DD
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDD 185          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.554e-50
Identity = 92/167 (55.09%), Postives = 129/167 (77.25%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIY 623
            +YDYL K+V+IGDSGVGKSNLLSR+ +NEFS+   STIGVEF+T++++ D+K++K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+E+WLK+ R++   +  IMLVGNK+DL+  R VST +   FAE+    F+ETSAL+S NVE AF  +   IY
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIY 173          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+   FA+     F+ETSA  + NVE AF     +IY+ +     ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNE 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46
Identity = 90/179 (50.28%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+   FA+     F+ETSA  + NVE AF     +IY+ +     ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNE 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.384e-46
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +  D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL   R V  E+  AFA      FMETSA  + NVE AF     +IYR + +   ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNE 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.384e-46
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+   FA+     FME SA  + NVE AF +    IY+ +     ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNE 181          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.114e-46
Identity = 91/179 (50.84%), Postives = 118/179 (65.92%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDD 662
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R I  D+K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+   FA+     FME SA  + NVE AF +    IY+ +     ++ ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNE 181          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_RABIT8.440e-6065.14Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
ARA1_ARATH8.440e-6065.90Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
ARA4_ARATH1.440e-5956.34Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI6.688e-5757.69Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI3.554e-5055.09Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA1.825e-4650.28GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.825e-4650.28GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_HUMAN2.384e-4650.84Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_MAIZE2.384e-4650.84Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE3.114e-4650.84Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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