FC923139

Overview
NameFC923139
Unique NameFC923139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9428 contig Ccv1_Contig9428:116..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.599e-42
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+I  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   R VST+ A  FAE     F+ETSA  + NVE AF  +  QI
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQI 169          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.599e-42
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 677
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+E SA  SMNVE AF  +   I   ++RK  +     A  P
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 87/177 (49.15%), Postives = 124/177 (70.06%), Query Frame = 3
Query:  117 DDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKAL 647
            + +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++  D K VK QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK DL+  R V  + A  FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L
Sbjct:    2 NSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 178          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 88/166 (53.01%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            +YDYLFK++LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   RA+  E A AFA+     FMETSA ++ NVE AF  +   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI 169          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 677
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+ETSA  S NVE AF  +   I   ++RK  +     A  P
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 86/184 (46.74%), Postives = 119/184 (64.67%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRKALEIGDDPAALP 677
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+ETSA  S NVE AF  +   I   ++RK  +     A  P
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.728e-42
Identity = 84/172 (48.84%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+ETSA  S NVE AF  +   I   ++RK
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.728e-42
Identity = 84/172 (48.84%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  126 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQIYRVVSRK 641
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R+I  D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E     A      F+ETSA  S NVE AF  +   I   ++RK
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRK 176          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.653e-42
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            DY YLFK++LIGDSGVGKS LL RF  + +S    STIGV+F  R+I  + K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT  +TFENV +WL+E+      N+  +LVGNK+DL   + V    A AFA+     F+ETSA +S NVE AF  + T+I
Sbjct:    4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI 169          
BLAST of FC923139 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.077e-42
Identity = 87/166 (52.41%), Postives = 114/166 (68.67%), Query Frame = 3
Query:  123 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRCDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDATAFAERENTFFMETSALESMNVENAFTEVLTQI 620
            +YDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +LVGNK+DL   + V+TE A AFA+     FMETSA  + NV+ AF  +   I
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASI 169          
The following BLAST results are available for this feature:
BLAST of FC923139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_PHYIN1.599e-4254.22Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB8B_BOVIN1.599e-4246.74Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPT1_YEAST2.089e-4249.15GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RBD2A_ARATH2.089e-4253.01Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB8B_RAT2.089e-4246.74Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE2.089e-4246.74Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_PONAB2.728e-4248.84Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_HUMAN2.728e-4248.84Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB1A_DICDI4.653e-4254.22Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
YPTM2_MAIZE6.077e-4252.41GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC31701E05EF StrClemenN Citrus clementina cDNA clone C31701E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923139 ID=FC923139; Name=FC923139; organism=Citrus clementina; type=EST; length=749bp
GAGAAGCATTTATTAAATCTCTTTCGCGTCAGATGATCTGCTAATCCCAA
AAAAATTAATTAAGGAATATACAAATACATAAGAGAACAAAAAGAGAAAT
GGGTGCGTACAGAGCGGACGATGACTATGATTATTTGTTCAAGGTGGTTT
TGATCGGCGACTCCGGCGTCGGAAAATCGAACCTTTTGTCCAGGTTCACA
CGCAACGAGTTTAGCCTCGAATCAAAGTCCACCATTGGCGTCGAGTTTGC
TACTCGGAGTATCCGTTGTGATGATAAGATCGTCAAGGCTCAGATTTGGG
ATACCGCCGGCCAAGAAAGGTATCGTGCAATCACAAGTGCATACTATCGA
GGGGCTGTTGGTGCTTTGCTGGTCTATGATGTCACGCGTCATGTTACATT
TGAAAATGTAGAGCGATGGCTGAAGGAGCTCCGAGATCACACAGATTCAA
ACATTGTGATCATGCTTGTTGGTAACAAAGCAGATCTACGCCACCTGAGA
GCAGTTTCCACTGAAGATGCCACAGCTTTTGCAGAACGAGAAAACACTTT
TTTTATGGAAACATCTGCCCTTGAGTCCATGAATGTGGAGAATGCATTCA
CAGAGGTGCTGACCCAGATCTATCGTGTTGTAAGCAGGAAGGCTCTCGAA
ATTGGAGATGACCCAGCAGCTTTGCCCAGGGACAGACAAATCATGTGGAA
CTAAGATGACGTATCAGCGGTAAGAAAGTCGATGTGTTCAAAACTAATA
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