FC923144

Overview
NameFC923144
Unique NameFC923144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:39..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EI3HB_DANRE (Eukaryotic translation initiation factor 3 subunit H-B OS=Danio rerio GN=eif3hb PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.954e-41
Identity = 87/209 (41.63%), Postives = 136/209 (65.07%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            P++ +QIEGLV++KIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST+ G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +F+ E L++ ++ +  +FEE+P+ + NS LI+  + ELE  +    + ++  +LSSS  LE+
Sbjct:   16 PVKQIQIEGLVVMKIIKHYQEEGQGSEVVQGVLLGLVVEDQLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTLYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLCLKAYRLTPKLMEICKEKDFSSEGLKKASVGYEHMFEEVPIVIKNSHLINVLLWELEEKSTAADK-HELLSLSSSSHLEK 222          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_CHICK (Eukaryotic translation initiation factor 3 subunit H OS=Gallus gallus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 89/206 (43.20%), Postives = 136/206 (66.02%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++  +L+SS  L
Sbjct:   32 VKQVQIDGLVVLKIIKHYQEEGQGNEVVQGVLLGLVVDDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHL 235          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPTN (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ATEG_00190 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 93/224 (41.52%), Postives = 130/224 (58.04%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADG-------------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPFLE 697
            PL  V++E LV++KIIKHC +  P   TG ++G+D    LE+TN FPFP+ E   E   D              AN  YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI+ F+ +L+        D  P   AL S PF++
Sbjct:    7 PLTAVKVEALVVMKIIKHCSQTFPTTATGSIVGMDAEGTLEITNSFPFPVVEMPAESHFDNTAPNPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQYFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSPKFMAAFKENKFTAEELQKSGLRYQDIFVELPVEIHNSHLITTFLHQLQCPRQSAPTDLPPSLAALESGPFVK 230          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPNC (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g01790 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.882e-40
Identity = 91/222 (40.99%), Postives = 130/222 (58.56%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADG---------------ANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPF 691
            PL  V++E LV++KIIKH  +  P   TG ++G+DV   LE+TN FPFP+ E   E   D                A Y+ EM+R +REVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++ NL + DI  E+PV++ NS LI++F+ +L+  T  T  D  P   AL SS +
Sbjct:    7 PLTAVKVEALVVMKIIKHGSQAFPTTATGSIVGMDVDGTLEITNSFPFPVVEVPAESHFDNTAPNPAAAAPRAKANAAYEAEMVRMMREVNVDANNVGWYTSANMGNFINMNVIENQFFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSPKFMAAFKENKFTSEELQKSNLRYQDILVELPVEIHNSHLITSFIHQLQTPTQATPSDLPPSLAALESSQY 228          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_SALSA (Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.459e-40
Identity = 89/209 (42.58%), Postives = 134/209 (64.11%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            P++ +QIEGLV+LK+IKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++   LSSS  LE+
Sbjct:   27 PVKQIQIEGLVVLKMIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLNLSSSNHLEK 233          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_RAT (Eukaryotic translation initiation factor 3 subunit H OS=Rattus norvegicus GN=Eif3h PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.459e-40
Identity = 89/206 (43.20%), Postives = 135/206 (65.53%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++  +L+SS  L
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHL 239          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EI3HA_DANRE (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.459e-40
Identity = 87/209 (41.63%), Postives = 136/209 (65.07%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFLER 700
            P++ +Q++GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  ++++E D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +FT E L++  +++  +FEE+P+ + NS LI+  M +L+  + +  + ++   LSSS  LE+
Sbjct:   18 PVKQIQVDGLVVLKIIKHYQEEGQGSEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDVEFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPLKTAQGSLCLKAYRLTPKLMEICKEKDFTPEGLKKAAVAYEHMFEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLNLSSSNHLEK 224          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_BOVIN (Eukaryotic translation initiation factor 3 subunit H OS=Bos taurus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.211e-40
Identity = 89/206 (43.20%), Postives = 135/206 (65.53%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++  +L+SS  L
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKGNITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHL 239          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_HUMAN (Eukaryotic translation initiation factor 3 subunit H OS=Homo sapiens GN=EIF3H PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.194e-40
Identity = 89/206 (43.20%), Postives = 135/206 (65.53%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++  +L+SS  L
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHL 239          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_MOUSE (Eukaryotic translation initiation factor 3 subunit H OS=Mus musculus GN=Eif3h PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.342e-40
Identity = 88/206 (42.72%), Postives = 135/206 (65.53%), Query Frame = 2
Query:   83 LRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSSSPFL 694
            ++ VQI+GLV+LKIIKH +E      +V G LLGL V   LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ ++++  +FEE+P+ + NS LI+  M ELE  + V  + ++  +L+SS  L
Sbjct:   36 VKQVQIDGLVVLKIIKHYQEEGQGTEVVQGVLLGLVVEDRLEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKASITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHL 239          
The following BLAST results are available for this feature:
BLAST of FC923144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EI3HB_DANRE4.954e-4141.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHICK8.450e-4143.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPTN8.450e-4141.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ASPNC1.882e-4040.99Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SALSA2.459e-4042.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_RAT2.459e-4043.20Eukaryotic translation initiation factor 3 subunit... [more]
EI3HA_DANRE2.459e-4041.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOVIN3.211e-4043.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_HUMAN4.194e-4043.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MOUSE9.342e-4042.72Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701E10EF StrClemenN Citrus clementina cDNA clone C31701E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923144 ID=FC923144; Name=FC923144; organism=Citrus clementina; type=EST; length=735bp
GAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCTAGGTCTTTTCTAC
AAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAGAGTTGTTCAGATT
GAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCAAGGAGTTTTCACC
AGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTTGGTAGCGTGCTTG
AAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGACGAAGAAATT
GAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGTCTAAGAGA
GGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCAACAATGCTAG
GATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAACTACCAGGAG
AATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAAGGTCCAATCA
AGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCCTTTATGGATC
TTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGAGAAAAATTTA
TCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCTCAAATTCTGC
ACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACTCCAGTCACAC
AGCGTGATTACGACCCGCCTGCATTGTCAAGCAGTCCATTCTTGGAGAGA
ATATGGAATTTTTGATTGATGCATGGATGATTGTC
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