FC923144

Overview
NameFC923144
Unique NameFC923144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:39..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ASPOR (Eukaryotic translation initiation factor 3 subunit H OS=Aspergillus oryzae GN=AO090038000435 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.220e-39
Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPFLE 697
            PL  V+++ LV++KIIKH  +  P   TG ++G+DV   LE+TN FPFP+ E   +   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS QG+L+ +A +LS  FM  ++ N FT E+L++ +L   DIF E+PV++ NS LI+ F+ +L+  +  T  D  P   AL  S F++
Sbjct:    7 PLTAVKVDALVVMKIIKHSSQSFPTTATGSIVGMDVDGTLEITNSFPFPVVEMPADSHFDNAAPNPAAAAPRAKANVAYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSAQGSLSLRAFRLSSKFMTAFKENKFTSEELQKSSLRHQDIFVELPVEIHNSHLITTFIHQLQCPSQSTPTDLPPSLAALEKSSFVK 230          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_NEOFI (Eukaryotic translation initiation factor 3 subunit H OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_015650 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 87/212 (41.04%), Postives = 124/212 (58.49%), Query Frame = 2
Query:  116 LKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSPFLE 697
            +KI+KHC +  P   TG ++G+DVG  LE+TN FPFP+ E   E   D A                YQ EM+R LREVNVD N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QG+L+ +A +LS  FM  ++ N FT E+L++  L + DIF E+PV++ NS LI++F+ +L+        D  P   AL S PF++
Sbjct:    1 MKIMKHCSQTFPTTATGSIVGMDVGGTLEITNSFPFPVVEVPPESHFDNAAANPAAAAPRAKANTVYQAEMIRMLREVNVDANNVGWYTSANMGNFVNMNVIENQFFYQKEMNERTVALVHDVSRSSQGSLSLRAFRLSPRFMTAFKENKFTSEELQKSGLRYQDIFVELPVEIHNSHLITSFIHQLQTPNIPAPTDLPPSLAALESGPFVK 212          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_NEUCR (Eukaryotic translation initiation factor 3 subunit H OS=Neurospora crassa GN=NCU07929 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 83/197 (42.13%), Postives = 118/197 (59.90%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFP---IQEEDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTEL 628
            P++ VQ+E LV++KI+KHC    P + TG ++G+D    +EVTN F FP   +   D   +A           AN  YQ EM+R L+EVNVD N VGWY S  +G F     IE   +YQ+   + V +++D SRS+QGAL+ +A KLS  FM  Y+   FT E LR   L++ DIF E+PV V NS L+++F+ ++
Sbjct:    9 PIKSVQVEALVVMKIVKHCSTSFPTVATGSIVGMDNNGAIEVTNSFQFPSVDVSSSDSHSDASSLAAAAPRAKANIVYQNEMIRHLKEVNVDANNVGWYTSATMGNFINMSFIENQYHYQKENEKTVALVHDVSRSSQGALSLRAFKLSPEFMTAYKEAKFTTESLRNSKLTYKDIFVELPVNVHNSHLLTSFLHQI 205          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_COCIM (Eukaryotic translation initiation factor 3 subunit H OS=Coccidioides immitis GN=CIMG_10297 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.948e-37
Identity = 84/205 (40.98%), Postives = 121/205 (59.02%), Query Frame = 2
Query:  116 LKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN---------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPALSS 682
            +KIIKH  +  P   TG L+G+DV   LEVTN FPFPI +   +   DGA                YQ EM++ LREVN+D N VGWY S  +G F    +IE    YQ+ +  R V +++D SRS+QGAL+ +A +LS  FM  ++ N FT E L++ NL + DIF E+PV++ NS L+++++ +L    P    D  PP+L++
Sbjct:    1 MKIIKHSTQLFPTTATGSLVGMDVRGTLEVTNAFPFPIVDIPADSHLDGAPANAAAAAPRAKSNAVYQSEMIKMLREVNIDANNVGWYTSANMGNFVNLNIIENQYFYQKELNERTVALVHDVSRSSQGALSLRAFRLSPQFMAAFKENKFTTENLQKSNLRYQDIFVELPVQIHNSHLLTSYLHQLPSPPPAENLDL-PPSLAA 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_CULQU (Eukaryotic translation initiation factor 3 subunit H OS=Culex quinquefasciatus GN=CPIJ005299 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.823e-35
Identity = 83/197 (42.13%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   62 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A+EV   +  VQ +GL  +K++KHC E S +   +  G LLGL V   LE+TNCFPFP +  DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+   FT E LR   + + ++F E+P+ + NSAL +  M+EL    P
Sbjct:   11 AQEVDNTISYVQCDGLAAMKMVKHCHEESLSNMEVAQGALLGLVVDDRLEITNCFPFP-KSSDETIDEE--EYQLNMMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSKRGFLTLKAYRLTPQAIAMYKEGEFTPEALRNLKVGYENLFLEVPIVIKNSALCNIMMSELAEMVP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_AEDAE (Eukaryotic translation initiation factor 3 subunit H OS=Aedes aegypti GN=AAEL007945 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.823e-35
Identity = 83/197 (42.13%), Postives = 120/197 (60.91%), Query Frame = 2
Query:   62 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A+EV   +  VQ +GL  +K++KHC E S +   +  G LLGL V   LE+TNCFPFP +  DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+   FT E LR   + + ++F EIP+ + NSAL +  M+E++   P
Sbjct:   11 AQEVDNTISYVQCDGLAAMKMVKHCHEESRSNMEVAQGALLGLVVDDRLEITNCFPFP-KSSDETIDEE--EYQLNMMRRLRLVNVDHFHVGWYQSADVGNFLSLPLLESQYHYQTSIEESVVVIYDTQKSARGFLTLKAYRLTPQAIAMYKEEKFTPEALRNLKVGYENLFIEIPIVIKNSALCNIMMSEMKEMVP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_ANOGA (Eukaryotic translation initiation factor 3 subunit H OS=Anopheles gambiae GN=AGAP009204 PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 5.305e-35
Identity = 83/199 (41.71%), Postives = 120/199 (60.30%), Query Frame = 2
Query:   56 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFS---PALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A ++ V   +  VQ +GL  +K++KHC E S     +  G LLGL V   LE+TNCFPFP  + DE I+ +   YQL MMR LR VNVD+  VGWYQS  +G F ++ L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+  +FT E LR   + + ++F EIP+ + NSAL +  M+EL    P
Sbjct:    8 ARSQPVDNTISYVQCDGLAAMKMVKHCHEESLNNMEVAQGALLGLVVDDRLEITNCFPFP--KSDETIDEE--EYQLNMMRRLRHVNVDHFHVGWYQSADVGNFLSSTLLESQYHYQTSIEESVVVIYDTQKSARGFLTLKAYRLTPQAIAMYKERDFTPEALRNLKVGYENLFIEIPIVIKNSALCNIMMSELTELVP 202          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_BOTFB (Eukaryotic translation initiation factor 3 subunit H OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_03240 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.928e-35
Identity = 87/224 (38.84%), Postives = 131/224 (58.48%), Query Frame = 2
Query:   59 AAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDPPA 673
            A++EV  PL  VQ+E LV++KI+K C    P   TG ++G+D    L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+ + FT E +++  L++ DI  E+P+ V NS L+++F+ ++  + P  ++D D PA
Sbjct:    5 ASKEV--PLHSVQVEALVVMKIVKACAATYPTTATGSIVGMDSNGTLQITNSFPFPTTDVATSDSHPNDHMAASNIAAAAPRSKANVIYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPTFMAAYKESKFTTENMQKSKLTYKDILVELPIIVHNSHLLTSFLHQMPVELP--KKDLDFPA 224          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_SCLS1 (Eukaryotic translation initiation factor 3 subunit H OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_01190 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.543e-34
Identity = 89/246 (36.18%), Postives = 131/246 (53.25%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQE-------EDEEIEADG---------AN--YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQ-ENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDY----------DPPA----------LSSSPFLER 700
            PL  VQ+E LV++KI+K C    P   TG ++G+D    L++TN FPFP  +        ++ + A           AN  YQ EM++ L+EVNVD N VGWY S  +G F    LIE    YQ E   R V +++D SRS QGAL+ +A +LS +FM  Y+   FT E +++  L++ DI  E+P+ V NS L+++F+ ++  + P  + D+           PP           LS  P+LER
Sbjct:   10 PLHSVQVEALVVMKIVKACAATYPTTATGSIVGMDSNGTLQITNSFPFPTADVAASDSHPNDHMAASNIAAAAPRSKANIVYQSEMIKMLKEVNVDANNVGWYTSANMGNFINTSLIENQFFYQKEPNERTVALVHDVSRSAQGALSLRAFRLSPNFMTAYKEGKFTTENMQKSKLTYKDILVELPIIVHNSHLLTSFLHQMPVELPKKELDFPASLADLTRNTPPTPLYPNLESLDLSIDPYLER 255          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROGR (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila grimshawi GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.633e-34
Identity = 84/210 (40.00%), Postives = 122/210 (58.10%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN  AR     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE +  D   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+ ++FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRGARH----ARTEDTENTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETM--DDETYQLTVMRHLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDSDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
The following BLAST results are available for this feature:
BLAST of FC923144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_ASPOR1.220e-3940.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEOFI4.637e-3941.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEUCR6.695e-3842.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_COCIM1.948e-3740.98Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CULQU1.823e-3542.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_AEDAE1.823e-3542.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_ANOGA5.305e-3541.71Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOTFB6.928e-3538.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SCLS11.543e-3436.18Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROGR2.633e-3440.00Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701E10EF StrClemenN Citrus clementina cDNA clone C31701E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923144 ID=FC923144; Name=FC923144; organism=Citrus clementina; type=EST; length=735bp
GAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCTAGGTCTTTTCTAC
AAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAGAGTTGTTCAGATT
GAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCAAGGAGTTTTCACC
AGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTTGGTAGCGTGCTTG
AAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGACGAAGAAATT
GAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGTCTAAGAGA
GGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCAACAATGCTAG
GATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAACTACCAGGAG
AATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAAGGTCCAATCA
AGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCCTTTATGGATC
TTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGAGAAAAATTTA
TCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCTCAAATTCTGC
ACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACTCCAGTCACAC
AGCGTGATTACGACCCGCCTGCATTGTCAAGCAGTCCATTCTTGGAGAGA
ATATGGAATTTTTGATTGATGCATGGATGATTGTC
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