FC923144

Overview
NameFC923144
Unique NameFC923144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:39..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_PHANO (Eukaryotic translation initiation factor 3 subunit H OS=Phaeosphaeria nodorum GN=SNOG_06952 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.439e-34
Identity = 86/224 (38.39%), Postives = 120/224 (53.57%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGAN------------------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIR-RCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDP--PALSSSP 688
            P + VQ++ LV +KI     +  P+L TG L+G++   VLE+TN FP+P   E     ADG N                  Y  EM++ LREVNVD N VGWY ST +G F     IE    YQ  +  R V +IYD SRS+QG L  +A +LS SF+  Y+   FT E L++ +L + DI  E+PV V NS L+++ + +L  + P  +  + P   AL   P
Sbjct:    9 PFKTVQVDALVAIKIATASGKAFPSLATGSLVGMEKNGVLEITNSFPYP---EINTASADGQNDTAANLSAAAPRAKQNIAYGNEMIKFLREVNVDANNVGWYTSTSMGNFVNLNTIENQFYYQSQLNERTVALIYDVSRSSQGTLNLRAYRLSPSFVTAYKEGKFTTESLQKSSLRYQDILVELPVTVHNSHLLTSLLHQLPSEAPKEELSFPPNLAALQQDP 229          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_MAGGR (Eukaryotic translation initiation factor 3 subunit H OS=Magnaporthe grisea GN=MGG_05156 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.865e-34
Identity = 77/205 (37.56%), Postives = 118/205 (57.56%), Query Frame = 2
Query:   80 PLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPI----------QEEDEEIEADGAN-------YQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            P++ VQ+E LV++KI KHC    P + TG ++G+D  +++EVTN   FP            E D   +A  A        YQ EM++ LREVNVD N VGWY S  +G F T   IE   +YQ    + + +++D SRS+Q +L+ +A +LS +FM   + N FT E L++  L++ DI  E+PV + NS L++ ++ ++ P  P
Sbjct:    9 PIKSVQVEALVVMKIAKHCSSSFPTIATGSIVGMDNDTLVEVTNSLNFPTVDVANVDSHQSERDASAQAAAAPRSKANLMYQAEMIKHLREVNVDANCVGWYTSATMGNFVTMSFIENQAHYQRENPKAIALVHDVSRSSQASLSLRAFRLSTAFMTALKENKFTTENLQKTKLTYKDILIEMPVVIHNSHLLTTYLHQI-PSAP 212          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROWI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila willistoni GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 79/198 (39.90%), Postives = 117/198 (59.09%), Query Frame = 2
Query:   56 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A  EE    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    9 ARTEETENAINYVQCDGLAVMKMVKHCHEESNNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRNLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_BOMMO (Eukaryotic translation initiation factor 3 subunit H OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.000e-33
Identity = 78/197 (39.59%), Postives = 119/197 (60.41%), Query Frame = 2
Query:   62 AEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA---LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A E    ++ VQ +GL ++KI+KHC E S +   +  G LLGL V + LE+TNCFPFP  ++  + E     YQL+MMR LR VNVD+  VGWYQS  +G F +  L+E+  +YQ +I   V +IYD  +S +G L  KA +L+   + +Y+  ++T E LR   + + ++F E+P+ + NS L +  ++EL    P
Sbjct:   11 APENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDEE----EYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMIP 203          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROVI (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila virilis GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.707e-33
Identity = 83/210 (39.52%), Postives = 122/210 (58.10%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN  AR     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRGARH----ARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROSE (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila sechellia GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 82/210 (39.05%), Postives = 122/210 (58.10%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + + ++F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELNELLP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROME (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila melanogaster GN=eIF-3p40 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 82/210 (39.05%), Postives = 122/210 (58.10%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + + ++F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSMALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYENLFAEIPIVIKNSPLTNIMMSELNELLP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROYA (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila yakuba GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.911e-33
Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROER (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila erecta GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 82/210 (39.05%), Postives = 121/210 (57.62%), Query Frame = 2
Query:   20 MANTMARSFLQVAAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            MAN   R     A  E+    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    1 MANRANR---HAARTEDSDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--LYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 204          
BLAST of FC923144 vs. ExPASy Swiss-Prot
Match: EIF3H_DROAN (Eukaryotic translation initiation factor 3 subunit H OS=Drosophila ananassae GN=eIF-3p40 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.802e-33
Identity = 79/198 (39.90%), Postives = 117/198 (59.09%), Query Frame = 2
Query:   56 AAAEEVAPPLRVVQIEGLVMLKIIKHCKEFSPA--LVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTP 643
            A  EE    +  VQ +GL ++K++KHC E S    L  G LLGL V   LE+TNCFPFP +  DE ++ +   YQL +MR LR VNVD+  VGWYQS+ +G   +  L+E+  +YQ +I   V ++YD  +S++G L  KA +L+   + +Y+  +FT E  R   + +  +F EIP+ + NS L +  M+EL    P
Sbjct:    9 ARNEESDNTINYVQCDGLAVMKMVKHCHEESSNMDLAQGALLGLVVDKCLEITNCFPFP-KSGDETMDEE--MYQLTVMRRLRRVNVDHLHVGWYQSSDVGNSLSLALLESQYHYQTSIEESVVVVYDTQKSSRGFLCLKAYRLTPQAIQMYKDGDFTPEAFRTLKVGYESLFAEIPIVIKNSPLTNIMMSELNELLP 203          
The following BLAST results are available for this feature:
BLAST of FC923144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3H_PHANO3.439e-3438.39Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_MAGGR5.865e-3437.56Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROWI1.000e-3339.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_BOMMO1.000e-3339.59Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROVI1.707e-3339.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROSE2.229e-3339.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROME2.229e-3339.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROYA2.911e-3339.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROER3.802e-3339.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_DROAN3.802e-3339.90Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701E10EF StrClemenN Citrus clementina cDNA clone C31701E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923144 ID=FC923144; Name=FC923144; organism=Citrus clementina; type=EST; length=735bp
GAGGAGATTGTTCTTCCAAATGGCAAATACAATGGCTAGGTCTTTTCTAC
AAGTTGCAGCTGCGGAGGAGGTTGCGCCGCCTCTCAGAGTTGTTCAGATT
GAGGGTCTGGTTATGCTAAAAATAATCAAACACTGCAAGGAGTTTTCACC
AGCTTTGGTGACGGGACAACTCCTTGGGTTAGATGTTGGTAGCGTGCTTG
AAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGACGAAGAAATT
GAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGTCTAAGAGA
GGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCAACAATGCTAG
GATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAACTACCAGGAG
AATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAAGGTCCAATCA
AGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCCTTTATGGATC
TTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGAGAAAAATTTA
TCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCTCAAATTCTGC
ACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACTCCAGTCACAC
AGCGTGATTACGACCCGCCTGCATTGTCAAGCAGTCCATTCTTGGAGAGA
ATATGGAATTTTTGATTGATGCATGGATGATTGTC
back to top