FC923160

Overview
NameFC923160
Unique NameFC923160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: THM2_THADA (Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.140e-28
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 2
Query:  179 STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNA-PASWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            + TF ++N+C +TVW    S  D+ AL   G  L  GE+ T+N  P + GG +WART C  D +G+  C TGDCGG L+C   G  PP TLAEF L+ Y G+D+ D+S + G+N+P+   P       C    C  D+   CP++LK      + G  C  AC  F+  +YCC
Sbjct:   22 AATFEIVNRCSYTVWAAA-SKGDA-ALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGGLLQCKRFG-RPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMDFSP---TTRGCRGVRCAADIVGQCPAKLK------APGGGCNDACTVFQTSEYCC 181          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: OS81_SOLCO (Osmotin-like protein OSML81 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.813e-27
Identity = 68/173 (39.31%), Postives = 93/173 (53.76%), Query Frame = 2
Query:  179 STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWGGC-MWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            + T  + N C +TVW      A +P     G  L KG+T  +NAP       +W RT C+ ++ G+ +C TGDCGG L+C+G G  PP TLAE+ LD +   DF+D+SLVDG+N+P+   P       C +  C  ++N  CP  LKV   GG     C + C  F   QYCC
Sbjct:   21 AATIEVRNNCPYTVWA-----ASTPIGG--GRRLNKGQTWVINAPRGTKMARIWGRTGCNFNAAGRGSCQTGDCGGVLQCTGWGK-PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSAGKCHAIHCTANINGECPRALKV--PGG-----CNNPCTTFGGQQYCC 178          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 69/171 (40.35%), Postives = 93/171 (54.39%), Query Frame = 2
Query:  185 TFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNA-PASWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            TF ++N+C +TVW    S  D+ AL   G  L  GE+ T+N  P + GG +WART C  D +G   C TGDCGG L C   G  PP TLAEF L+ Y G+D+ D+S + G+N+P+   P       C    C  D+   CP++LK      + G  C  AC  F+  +YCC
Sbjct:    2 TFEIVNRCSYTVWAAA-SKGDA-ALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQY-GKDYIDISNIKGFNVPMNFSP---TTRGCRGVRCAADIVGQCPAKLK------APGGGCNDACTVFQTSEYCC 159          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.368e-27
Identity = 70/177 (39.55%), Postives = 97/177 (54.80%), Query Frame = 2
Query:  167 SCVTSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWGGC-MWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            S  T+ TF ++N+C +TVW      A SP     G  L+ G++  L+  A      +W RT C+ DS+G+  C TGDC G L+C+G G  PP TLAE+ L+ +   DFYD+SLVDG+N+P+   P      NC    C  D+N  CP+ L+    GG     C + C  F+  QYCC
Sbjct:   18 STATAATFEILNQCSYTVWA-----AASPG---GGRRLDAGQSWRLDVAAGTKMARIWGRTNCNFDSSGRGRCQTGDCSGGLQCTGWG-QPPNTLAEYALNQFNNLDFYDISLVDGFNIPMEFSPTSS---NCHRILCTADINGQCPNVLR--APGG-----CNNPCTVFQTNQYCC 175          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.535e-26
Identity = 72/179 (40.22%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  164 FSCVT-STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNA-PASWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            F  VT + TF ++NKC +TVW      A SP     G  L+ G++ ++N  P +    +W RT C+ D +G+  C TGDC G LEC G G A P TLAEF L+    QDF D+SLVDG+N+P+   P  G    C +  C   +N  CP++LK  T GG     C + C   +  +YCC
Sbjct:   19 FVAVTHAATFDIVNKCTYTVWA-----AASPG---GGRRLDSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKA-PNTLAEFALN-QPNQDFVDISLVDGFNIPMEFSPTNG---GCRNLRCTAPINEQCPAQLK--TQGG-----CNNPCTVIKTNEYCC 177          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 70/179 (39.11%), Postives = 97/179 (54.19%), Query Frame = 2
Query:  164 FSCVT-STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNA-PASWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            F  VT + TF ++N+C +TVW      A SP     G  L  G++ ++N  P +    +W RT C+ D +G+  C TGDC G LEC G G  PP TLAEF L+    QDF D+SLVDG+N+P+   P  G    C +  C   +N  CP++LK  T GG     C + C   +  ++CC
Sbjct:   19 FVAVTHAATFDIVNQCTYTVWA-----AASPG---GGRQLNSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYG-KPPNTLAEFALN-QPNQDFVDISLVDGFNIPMEFSPTNG---GCRNLRCTAPINEQCPAQLK--TQGG-----CNNPCTVIKTNEFCC 177          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: OS35_SOLCO (Osmotin-like protein OSML15 OS=Solanum commersonii PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.437e-24
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 2
Query:  179 STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWGGC-MWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            S  F + N C +TVW      A +P     G  LE+G++    AP       +W RT C+ D  G+  C TGDCGG LEC G G  PP TLAE+ L+ +   DF+D+S++DG+N+P+   P       C    CV ++N  CP  L+V   GG     C + C  F   QYCC
Sbjct:   22 SGVFEVHNNCPYTVWA-----AATPIGG--GRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKGWGK-PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTNPGPGKCHPIQCVANINGECPGSLRV--PGG-----CNNPCTTFGGQQYCC 179          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: OLPA_TOBAC (Osmotin-like protein OS=Nicotiana tabacum GN=OLPA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 65/173 (37.57%), Postives = 88/173 (50.87%), Query Frame = 2
Query:  179 STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWGGC-MWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGCVVDLNAACPSELKVMTDGGSGGVACKSACEAFRQPQYCC 694
            S  F + N C +TVW      A +P     G  LE+G++    AP       +W RT C+ D  G+  C TGDCGG LEC G G  PP TLAE+ L+ +   DF+D+S++DG+N+P+   P       C    C  ++N  CP  L+V   GG     C + C  F   QYCC
Sbjct:   22 SGVFEVHNNCPYTVWA-----AATPVGG--GRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQTGDCGGVLECKGWGK-PPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHGIQCTANINGECPGSLRV--PGG-----CNNPCTTFGGQQYCC 179          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPA-SWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  T+WP  +           GF L  G+T ++N PA +  G +WART CS +  G  +C TGDCGG+L CS SG  PPATLAEF + G   QDFYD+S++DG+NL +      GD   C    C
Sbjct:   19 SAATFNIKNNCGSTIWPAGIPVGG-------GFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGR-PPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSC 144          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.756e-22
Identity = 58/135 (42.96%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPA-SWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  T+WP  +           GF L  G+T ++N PA +  G +WART CS +  G  +C TGDCGG+L CS SG  PPATLAEF + G   QDFYD+S++DG+NL +      GD   C    C
Sbjct:   19 SAATFNIKNNCGSTIWPAGIPVGG-------GFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQ-PPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSC 144          
The following BLAST results are available for this feature:
BLAST of FC923160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
THM2_THADA8.140e-2839.88Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1[more]
OS81_SOLCO1.813e-2739.31Osmotin-like protein OSML81 OS=Solanum commersonii... [more]
THM1_THADA2.368e-2740.35Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]
OSL3_ARATH2.368e-2739.55Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
PRR1_TOBAC1.535e-2640.22Pathogenesis-related protein R major form OS=Nicot... [more]
PRR2_TOBAC7.619e-2639.11Pathogenesis-related protein R minor form OS=Nicot... [more]
OS35_SOLCO1.437e-2438.15Osmotin-like protein OSML15 OS=Solanum commersonii... [more]
OLPA_TOBAC4.181e-2437.57Osmotin-like protein OS=Nicotiana tabacum GN=OLPA ... [more]
PR1C_HORVU1.756e-2242.96Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU1.756e-2242.96Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]

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Properties
Property NameValue
Genbank descriptionC31701G03EF StrClemenN Citrus clementina cDNA clone C31701G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923160 ID=FC923160; Name=FC923160; organism=Citrus clementina; type=EST; length=732bp
GACTCTGCTTCCTACCTTCTCCCTCTTCTTCATTGACCTTTTTCTCTTTT
CTTTTTTTTCTTTTTTTTTTTTTATATTTTTAACATTCAGCAGCCACCAG
CCGCCAGCTCCTCCGATGGCCGCCTCTCAACTAACACTTTTACTTTTAAT
CACTCATTTAACATTTTCCTGTGTGACATCCACCACCTTCACAATGATCA
ACAAATGCGACCACACAGTATGGCCCGGCATTCTCTCTAACGCCGACTCT
CCCGCACTCTCCACCACCGGCTTCCCCCTTGAAAAGGGAGAGACCAAGAC
CCTCAACGCACCCGCTTCGTGGGGCGGCTGCATGTGGGCCAGAACACTCT
GCTCCCAGGACTCCACCGGTAAGTTCACCTGCGTCACAGGTGATTGCGGC
GGCAAGCTGGAATGCTCCGGCAGTGGTGCTGCCCCACCCGCCACTCTTGC
TGAGTTCAAGCTCGATGGCTATGGTGGCCAAGACTTCTATGATGTCAGTT
TGGTCGACGGCTACAACCTCCCCGTGCTTGTCGTTCCTCAGGGTGGTGAC
GGACCCAATTGTACAAGCACGGGATGCGTTGTCGACTTGAACGCCGCGTG
TCCTTCGGAGCTTAAGGTTATGACCGACGGTGGCAGCGGAGGTGTTGCTT
GCAAGAGCGCGTGCGAAGCCTTTAGGCAGCCGCAGTACTGTTGTAATGGC
GCGTTTAGTACTCCGATACATGCAAGCCATCT
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