FC923160

Overview
NameFC923160
Unique NameFC923160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14394 contig Ccv1_Contig14394:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.913e-22
Identity = 57/135 (42.22%), Postives = 77/135 (57.04%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPA-SWGGCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  T+WP  +           GF L  G+T ++N PA +  G +WART CS +  G  +C TGDCGG+L CS SG  PPATLAE+ + G   QDFYD+S++DG+NL +      GD   C    C
Sbjct:   19 SAATFNIKNNCGFTIWPAGIPVGG-------GFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGR-PPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFSCSTGDALQCRDPSC 144          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 2
Query:  179 STTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWG-GCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            + TFT+ N+C  TVWP     A +P     G  L  G+T T+N PA    G +W RT CS D +G+ +C TGDC G L C+ SG   P TLAEF +   G QDFYD+S++DGYN+ +      G    C  + C
Sbjct:   26 AATFTITNRCSFTVWP-----AATPVGG--GVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCTLSG-QKPLTLAEFTIG--GSQDFYDLSVIDGYNVAMSFSCSSGVTVTCRDSRC 149          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 55/135 (40.74%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWG-GCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TFT+ N C +TVWP  +           G  L++G+T TLN PA    G +W RT CS +  G  +C TGDC G L C+ SG   PATLAEF + G    D+YD+S++D YNL +      GD   C  + C
Sbjct:   20 SAATFTITNNCGYTVWPAAIPVGG-------GQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFNG-GSGSCQTGDCAGALSCTLSGQ--PATLAEFSIGGE--HDYYDISVIDVYNLAMDFSCSTGDALQCRDSSC 142          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.625e-18
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWG-GCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  TVWP  +           GF L   ++  +N PA    G +W RT CS ++ G+ +C TGDC G L C+ SG   PATLAE+ + G   QDFYD+S++DGYNL +      G    C  +GC
Sbjct:   20 SAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQ--PATLAEYTIGG--SQDFYDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWG-GCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  TVWP  +           GF L   ++  +N PA    G +W RT CS ++ G+ +C TGDC G L C+ SG   PATLAE+ + G   QDFYD+S++DGYNL +      G    C    C
Sbjct:   20 SAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQ--PATLAEYTIGG--SQDFYDISVIDGYNLAMDFSCSTGVALKCRDANC 142          
BLAST of FC923160 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 51/135 (37.78%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  176 TSTTFTMINKCDHTVWPGILSNADSPALSTTGFPLEKGETKTLNAPASWG-GCMWARTLCSQDSTGKFTCVTGDCGGKLECSGSGAAPPATLAEFKLDGYGGQDFYDVSLVDGYNLPVLVVPQGGDGPNCTSTGC 577
            ++ TF + N C  TVWP  +           GF L   ++  +N PA    G +W RT CS ++ G+ +C TGDC G L C+ SG   PATLAE+ + G   QDFYD+S++DG+NL +      G    C    C
Sbjct:   20 SAATFRITNNCGFTVWPAGIPVGG-------GFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNN-GRGSCATGDCAGALSCTLSGQ--PATLAEYTIGG--SQDFYDISVIDGFNLAMDFSCSTGVALKCRDANC 142          
The following BLAST results are available for this feature:
BLAST of FC923160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
TLP_WHEAT3.913e-2242.22Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
TLP_ORYSJ9.638e-2142.54Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST4_AVESA6.907e-1940.74Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
RST3_AVESA2.625e-1839.26Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.701e-1738.52Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST1_AVESA4.950e-1737.78Thaumatin-like pathogenesis-related protein 1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31701G03EF StrClemenN Citrus clementina cDNA clone C31701G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923160 ID=FC923160; Name=FC923160; organism=Citrus clementina; type=EST; length=732bp
GACTCTGCTTCCTACCTTCTCCCTCTTCTTCATTGACCTTTTTCTCTTTT
CTTTTTTTTCTTTTTTTTTTTTTATATTTTTAACATTCAGCAGCCACCAG
CCGCCAGCTCCTCCGATGGCCGCCTCTCAACTAACACTTTTACTTTTAAT
CACTCATTTAACATTTTCCTGTGTGACATCCACCACCTTCACAATGATCA
ACAAATGCGACCACACAGTATGGCCCGGCATTCTCTCTAACGCCGACTCT
CCCGCACTCTCCACCACCGGCTTCCCCCTTGAAAAGGGAGAGACCAAGAC
CCTCAACGCACCCGCTTCGTGGGGCGGCTGCATGTGGGCCAGAACACTCT
GCTCCCAGGACTCCACCGGTAAGTTCACCTGCGTCACAGGTGATTGCGGC
GGCAAGCTGGAATGCTCCGGCAGTGGTGCTGCCCCACCCGCCACTCTTGC
TGAGTTCAAGCTCGATGGCTATGGTGGCCAAGACTTCTATGATGTCAGTT
TGGTCGACGGCTACAACCTCCCCGTGCTTGTCGTTCCTCAGGGTGGTGAC
GGACCCAATTGTACAAGCACGGGATGCGTTGTCGACTTGAACGCCGCGTG
TCCTTCGGAGCTTAAGGTTATGACCGACGGTGGCAGCGGAGGTGTTGCTT
GCAAGAGCGCGTGCGAAGCCTTTAGGCAGCCGCAGTACTGTTGTAATGGC
GCGTTTAGTACTCCGATACATGCAAGCCATCT
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