FC923161

Overview
NameFC923161
Unique NameFC923161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14 contig Ccv1_Contig14:164..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923161 vs. ExPASy Swiss-Prot
Match: GDL40_ARATH (GDSL esterase/lipase At2g27360 OS=Arabidopsis thaliana GN=At2g27360 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 65/205 (31.71%), Postives = 96/205 (46.83%), Query Frame = 1
Query:   10 AVIVFGDSIVDTGNNNNLKTP---AKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVKELSLAYLDPTLKPEDLLTGVNFASGGCG------YDPLTTRXXXXXXXXXDQLQLFKEYIDKLRAIVGEEGKNRIFERSFFLV-VVGSNDINNNYFGSRIRRLQYDISTYTDLLVGHASTFLKEIYGLGARRIGVFGAPTLGC 594
            ++I FGDSI DTGN   L +P    +  FPPYG  F     +GRFS+G++  D +AE LG+  +   Y     K  +   GVNFA GG         +   T          +QL+ FKE +  L      + ++ I E +F L+  +G ND N   F    R+   ++     L++   S+ + E+  +GAR   V G   LGC
Sbjct:   33 SIISFGDSITDTGNLLGLSSPNDLPESAFPPYGETF-FHHPSGRFSDGRLIIDFIAEFLGIPHVPPFY---GSKNGNFEKGVNFAVGGATALECSVLEEKGTHCSQSNISLGNQLKSFKESLPYLCGSSSPDCRDMI-ENAFILIGEIGGNDYNFPLFD---RKNIEEVKELVPLVITTISSAISELVDMGARTFLVPGNFPLGC 229          
BLAST of FC923161 vs. ExPASy Swiss-Prot
Match: GDL21_ARATH (GDSL esterase/lipase At1g54030 OS=Arabidopsis thaliana GN=At1g54030 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 57/212 (26.89%), Postives = 91/212 (42.92%), Query Frame = 1
Query:   13 VIVFGDSIVDTGNNNNL-KTPAKCNFPPYGRDFEGGAATGRFSNGKVPSDILAEELGVKELSLAYLDPTLKPEDLLTGVNFASGGCGYDPLTTRXXXXXXXXXDQLQLFKEYIDKLRAIVGEEGKNRIFERSFFLVVVGSNDINNNYFGSRIRRLQYDISTYTDLLVGHASTFLKEIYGLGARRIGVFGAPTLGCLPSTRTVAGGIKRDCAK 645
            + VFGD + D GN   L +     +FPPYG     G ATGR+S+G +  D LA+ +G+ ++S   L       D   G NFA      D               Q++ F E  +K          N+    + +L+ +GS+D  + Y  S           + D ++      +K +YG G R+        LGCLP+ +  +G + ++C K
Sbjct:   53 LFVFGDGLYDAGNKQFLSQNRVDASFPPYGVTV--GQATGRWSDGSIVPDYLAKFMGIPKISPILLTTA----DFSHGANFAIA----DATVLGSPPETMTLSQQVKKFSENKNKWT--------NQTRSEAIYLIYIGSDDYLS-YAKSNPSPSDTQKQAFVDQVITTIKAEIKVVYGSGGRKFAFQNLAPLGCLPAVKQASGNV-QECVK 244          
The following BLAST results are available for this feature:
BLAST of FC923161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
GDL40_ARATH2.219e-1231.71GDSL esterase/lipase At2g27360 OS=Arabidopsis thal... [more]
GDL21_ARATH6.456e-1226.89GDSL esterase/lipase At1g54030 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC31701G04EF StrClemenN Citrus clementina cDNA clone C31701G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923161 ID=FC923161; Name=FC923161; organism=Citrus clementina; type=EST; length=741bp
ACTGTTTCAGCAGTTATTGTATTTGGAGATTCAATCGTTGATACAGGCAA
TAACAATAATCTGAAAACGCCGGCTAAATGTAATTTTCCTCCTTATGGGA
GAGATTTCGAGGGAGGAGCGGCAACTGGCAGATTTTCTAATGGAAAGGTC
CCCTCAGACATTTTAGCGGAAGAATTGGGCGTAAAAGAGCTTTCGCTAGC
ATATCTGGATCCAACTCTGAAACCTGAAGATCTTCTCACAGGTGTAAACT
TTGCTTCCGGTGGCTGTGGATACGATCCTTTGACCACAAGACTTTCGGCA
GCAGCTTTATCATTATCTGATCAGCTCCAACTGTTCAAGGAATATATAGA
CAAGCTGAGAGCGATTGTTGGAGAAGAAGGCAAAAACAGAATCTTTGAAA
GAAGTTTTTTTTTGGTGGTAGTAGGAAGCAATGACATAAACAACAACTAT
TTTGGTAGCCGCATTAGGAGATTACAGTATGATATTTCTACTTACACGGA
CCTTCTAGTTGGACATGCTTCAACGTTCCTTAAGGAAATATATGGCCTTG
GGGCACGAAGGATTGGAGTGTTCGGTGCACCGACGCTTGGCTGTTTACCG
TCAACAAGAACGGTGGCGGGAGGGATAAAGAGAGATTGTGCNAAAGAATA
CACGAAGCAGCGCAATTATTCAACTCTAAATTGTCTGCAGAACTGGATTC
TCTGAACATCTGCCAGACGTCAGGATTGTTACATTGATATC
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