FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 63/110 (57.27%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK +S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN R PGYYDGRYW MWKLPMFGC
Sbjct:   30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGC 137          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 1
Query:  316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S ++ T   AG+G    + GLK  S A LP + +    +   SNG + +CM+ W P+  KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R  GYYDGRYW MWKLPMFGC
Sbjct:    8 SPAVTTVNRAGAGMVAPFTGLK--SMAGLPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W PI  KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE++R P YYDGRYW MWKLPMFGC
Sbjct:    8 SPAVTTVNRAGAGMVAPFTGLK--SMAGFPTRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32
Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYW MWKLPMFGC
Sbjct:   27 FTGLKSAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGC 135          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYW MWKLPMFGC
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.265e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN + PGYYDGRYW MWKLPMFGC
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  376 SKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S A  PV    A SSK  SNG + RCM+ W P   KKFE LSYLP L+ + + +E+DY+++ GWIPC+EF +VG+V+RE    PGYYDGRYW MWKLPMFGC
Sbjct:   31 SSAAFPVTRKFADSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.958e-32
Identity = 61/110 (55.45%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS3_FLAPR1.328e-3255.45Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MALSP1.734e-3257.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR1.734e-3255.45Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS4_SOYBN1.734e-3252.76Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_SOYBN1.734e-3252.76Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLTU1.734e-3255.45Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3B_SOLLC2.265e-3256.36Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC2.265e-3256.36Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS_ZANAE2.958e-3257.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FLAPR2.958e-3255.45Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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