FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  367 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K  +K L   K ++       +  +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   14 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  439 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 126          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.289e-19
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  367 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            K  +K L   K ++       +  +K R M  W P NNK FE  S+LP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:   14 KECAKPLASPKVTLNKRGFATTIATKNRGMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGC 125          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.684e-19
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:  457 KTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDE--VGYVHRENS-----RMPGYYDGRYWAMWKLPMFGC 681
            K W P+NNK++E  SYLP L++  I +++DY++  GW PCLEF +    +V   N+        GYYD RYW MWKLPMFGC
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGC 111          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  499 SYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   +N    G     Y D RYW MWKLPMFGC
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGC 69          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS1_ACEAT9.871e-2042.86Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_ACEAT1.289e-1950.00Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_ACEAT1.289e-1942.86Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_CHLMO1.684e-1948.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ACECL4.017e-1350.00Ribulose bisphosphate carboxylase small chain 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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