FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32 Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 1 Query: 331 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 ++ A + + GLK T A LPV S VSNG + RCM+ W NKKFE LSYLP L+ + + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYW MWKLPMFGC Sbjct: 8 SSATAAAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGC 122
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32 Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 349 SGYLGLK-----PTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S + GLK P+SK + W KT SNGS+ RCM+ W P NKKFE LSYLP L+ + + KE++Y+LK W+PCLEF+E G + R PGYYDGRYW MWKLPMFGC Sbjct: 30 SAFTGLKSMAQFPSSKTMSNA--GAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGC 143
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32 Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS++ + +E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYW MWKLPMFGC Sbjct: 27 FTGLKSATSFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32 Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK ++ + K ++ +S SNG + CM+ W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSSATFPVTKKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.864e-32 Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32 Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 349 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + + GLK + + K + +S SNG + CM W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ R PGYYDGRYW MWKLPMFGC Sbjct: 24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32 Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK S A P S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+K W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 25 FTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.591e-32 Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + A PV + S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+ PGYYDGRYW MWKLPMFGC Sbjct: 20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGC 127
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32 Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK S A P S SNG + +CMK W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 25 FTGLK--SNAAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31 Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGC 134 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |