FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  316 SASIFTAPVAGSG-----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            +A++ TA  A        + GLK TS   +  K ++  +S   +NG +  CM+ W P N KKFE LSYLP+LS++S+ KEI+Y+L KGW+PCLEF EVG  +V+REN++ PGYYDGRYW MWKLPMFGC
Sbjct:    7 NAAVVTASTAAQANMVAPFSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGC 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+REN R PGYYDGRYW MWKLP+FGC
Sbjct:    8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+  LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC
Sbjct:   20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYW MWKLPMFGC
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31
Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1
Query:  316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S ++ T   AG+G    + GLK  S A  P + +    +   SNG + +CM+ W     KKFE LSYLP L D  +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ R PGYYDGRYW MWKLPMFGC
Sbjct:    8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYW MWKLP+FGC
Sbjct:    8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1
Query:  316 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678
            ++++ +A VA  G  GLK  S    PVK      +   SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYW MWKLPMFG
Sbjct:   16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFG 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31
Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  313 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            M +S+ TA  A          ++GLK TS    PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYW MWKLPMFGC
Sbjct:    7 MLSSVATAACAAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LS + +  EI+Y+LK GW+PCLEF+ E G+V+RE++  PGYYDGRYW MWKLPMFGC
Sbjct:   26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31
Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  S    P        S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC
Sbjct:   25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 132          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS_SILPR1.124e-3152.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO1.124e-3151.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_FLAPR1.124e-3154.55Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_NICSY1.124e-3153.64Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA1.468e-3151.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH3.271e-3151.97Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3_PEA4.272e-3152.46Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS1_FRIAG4.272e-3149.62Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS_STELP5.579e-3154.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FLAPR5.579e-3153.64Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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