FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31 Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 1 Query: 316 SASIFTAPVAGSG-----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVG--YVHRENSRMPGYYDGRYWAMWKLPMFGC 681 +A++ TA A + GLK TS + K ++ +S +NG + CM+ W P N KKFE LSYLP+LS++S+ KEI+Y+L KGW+PCLEF EVG +V+REN++ PGYYDGRYW MWKLPMFGC Sbjct: 7 NAAVVTASTAAQANMVAPFSGLKSTSAFPVSRKSNVDITS-LATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEF-EVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGC 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31 Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S ++ T AG+G + GLK S A P + + + SNG + +CM+ W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+REN R PGYYDGRYW MWKLP+FGC Sbjct: 8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + A PV + S SNG + +CMK W P+ KK+ LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 127
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.124e-31 Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + E++Y+LK GW+PCLEF+ E G+V+REN++ PGYYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.468e-31 Identity = 66/127 (51.97%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 316 SASIFTAPVAGSG----YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S ++ T AG+G + GLK S A P + + + SNG + +CM+ W KKFE LSYLP L D +AKE++Y+L+KGWIPCLEF+ E G+V+RE+ R PGYYDGRYW MWKLPMFGC Sbjct: 8 SPAVTTVNRAGAGTVAPFTGLK--SMAGFPTRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 3.271e-31 Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA++ T+P + + GLK S A PV ++ SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31 Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 316 SASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678 ++++ +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYW MWKLPMFG Sbjct: 16 ASTVQSAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFG 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 4.272e-31 Identity = 65/131 (49.62%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 313 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 M +S+ TA A ++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYW MWKLPMFGC Sbjct: 7 MLSSVATAACAAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.579e-31 Identity = 59/110 (53.64%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK S P S SNG + +CMK W P+ K++E LSYLP+L++ +AKE+DY+L+ W+PCLEF+ E G+V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 25 FTGLK--SNVAFPATKKANDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGC 132 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |