FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31 Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK T A LPV SS +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYW MWKLPMFGC Sbjct: 16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGC 122
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31 Identity = 64/131 (48.85%), Postives = 86/131 (65.65%), Query Frame = 1 Query: 313 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 M +S+ TA A ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYW MWKLPMFGC Sbjct: 7 MLSSVATAACAAPAQASMVAPFVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK T+ A + S + SNG + +CMK W P+ +KFE LSYLP LS +S+AK+I+Y++ KGWIPCLEF+ E +V+REN+R PGYYDGRYW MWKLPMFGC Sbjct: 28 FTGLKSTA-AFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 1 Query: 331 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678 +A VA G GLK S PVK + SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ E G+V+RE+++ PGYYDGRYW MWKLPMFG Sbjct: 21 SAAVAPFG--GLK--SMTGFPVKKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFG 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 P M++S T + + GLK T A LPV S +VSNG + RCM+ W KKFE LSYLP LS ++++K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYW MWKLPMFGC Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGC 122
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 9.517e-31 Identity = 64/126 (50.79%), Postives = 86/126 (68.25%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA++ T+P + + GLK ++ + K + +S T SNG + CMK W PI KKFE LSYLP L+D +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 SAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30 Identity = 64/126 (50.79%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S ++ T+P + + GLK ++ + K + +S T SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 STAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSIT-SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30 Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK S + K S S+ SNG K +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 138
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30 Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYW MWKLPMFGC Sbjct: 28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |