FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SA++ T+ +  +    + GLK  S A  PV         ++ SNG +  CMK W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYW MWKLP+FGC
Sbjct:    8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1
Query:  418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            S   SNG + +CMK W PI  KK+E LSYLP LSD++++KEIDY+++  WIPCLEF+ E G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            ++GLK  S A    + ++   S   SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N++ PGYYDGRYW MWKLPMFGC
Sbjct:   28 FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678
            + GLK  S A  PV K +    +   SNG +  CM+ W P+  KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN R PGYYDGRYW MW+LP+FG
Sbjct:   26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFG 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            GLK  S A  PV       +   +NG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678
            + GLK  S A  PV       +   SNGS+  CM+ W P+  KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ +  PGYYDGRYW MW+LP+FG
Sbjct:   25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFG 131          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 135          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            P  M++S  T     + + GLK T  A +PV      SS   VSNG + RCM+ W     KKFE LSYLP L+ + + K+I+Y+L+  W+PCLEF +VG+V+REN R PGYYDGRYW MWKLPMFGC
Sbjct:    3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGC 123          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            P  M++S  T     + + GLK T  A +PV      SS   VSNG + RCM+ W     KKFE LSYLP L+ + + K+I+Y+L+  W+PCLEF +VG+V+REN R PGYYDGRYW MWKLPMFGC
Sbjct:    3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGC 123          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS_RAPSA2.120e-3051.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA2.120e-3062.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FRIAG2.120e-3052.29Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MEDSA2.769e-3054.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR2.769e-3052.73Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_MESCR4.723e-3053.70Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TRIRP6.169e-3052.29Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR6.169e-3053.70Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_ORYSJ6.169e-3051.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI6.169e-3051.97Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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