FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30 Identity = 65/127 (51.18%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA++ T+ + + + GLK S A PV ++ SNG + CMK W PI KKFE LSYLP LSD +AKE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 SAAVVTSQLQATMVAPFTGLK--SSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30 Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1 Query: 418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S SNG + +CMK W PI KK+E LSYLP LSD++++KEIDY+++ WIPCLEF+ E G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.120e-30 Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 ++GLK S A + ++ S SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N++ PGYYDGRYW MWKLPMFGC Sbjct: 28 FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30 Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 355 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678 + GLK S A PV K + + SNG + CM+ W P+ KKFE LSYLP L+++ +AKE++Y+++KGWIPCLEF+ E G+V+REN R PGYYDGRYW MW+LP+FG Sbjct: 26 FTGLK--SSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFG 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30 Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 25 FTGLKSVSA--FPVTKKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.723e-30 Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 GLK S A PV + +NG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678 + GLK S A PV + SNGS+ CM+ W P+ KKFE LSYLP L+D+ + KE++Y+L+KGW+PC+EF+ E G+VHR+ + PGYYDGRYW MW+LP+FG Sbjct: 25 FTGLK--SSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFG 131
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30 Identity = 58/108 (53.70%), Postives = 73/108 (67.59%), Query Frame = 1 Query: 361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30 Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 P M++S T + + GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYW MWKLPMFGC Sbjct: 3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGC 123
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30 Identity = 66/127 (51.97%), Postives = 84/127 (66.14%), Query Frame = 1 Query: 304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSS-KTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 P M++S T + + GLK T A +PV SS VSNG + RCM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYW MWKLPMFGC Sbjct: 3 PSVMASSATTV----APFQGLKST--AGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGC 123 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |