FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30 Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA++ T+P + + GLK +S + K + +S VSNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 SAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITS-IVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30 Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK ++ + K+++ ++ SN K +CMK W P+ +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD G+V+REN R PG+YDGRYW MWKLPMFGC Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30 Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG K CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYW MWKLPMFGC Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29 Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + +CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E G+V+RE++R PGYYDGRYW MWKLPMFGC Sbjct: 52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29 Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK T K + +S T SNG K +CMK W + KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+RE++R+PGYYDGRYW MWKLPMFGC Sbjct: 28 FTGLKSTPVFPTTRKTNSDITSIT-SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29 Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1 Query: 418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYW MWKLPMFGC Sbjct: 47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 135
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29 Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1 Query: 316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA++ T+P + + GLK S A PV ++ SNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYW MWKLPMFGC Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYW MWKLPMFGC Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYW MWKLPMFGC Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |