FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.169e-30
Identity = 62/126 (49.21%), Postives = 85/126 (67.46%), Query Frame = 1
Query:  316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SA++ T+P   +    + GLK +S   +  K +   +S  VSNG +  CMK W P+  KKFE LSYLP L++  + KE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYW MWKLP+FGC
Sbjct:    8 SAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITS-IVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK ++   +  K+++  ++   SN  K +CMK W P+  +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD   G+V+REN R PG+YDGRYW MWKLPMFGC
Sbjct:   28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGC 136          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.057e-30
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG K  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYW MWKLPMFGC
Sbjct:   50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG + +CM+ W P+  KKFE LSYLP LS + +AKE+DY+L+K  IPCLEF+ E G+V+RE++R PGYYDGRYW MWKLPMFGC
Sbjct:   52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGC 136          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + GLK T       K +   +S T SNG K +CMK W  +  KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+RE++R+PGYYDGRYW MWKLPMFGC
Sbjct:   28 FTGLKSTPVFPTTRKTNSDITSIT-SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGC 136          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 52/89 (58.43%), Postives = 67/89 (75.28%), Query Frame = 1
Query:  418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   47 TSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 135          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.374e-29
Identity = 62/127 (48.82%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  316 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W P+  KKFE LSYLP L++  + KE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYW MWKLP+FGC
Sbjct:    8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGC 132          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYW MWKLPMFGC
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYW MWKLPMFGC
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG +  CM+ W P   KKFE LSYLP LS + +AKE+DY+L+  W+PC+EF + G+V+REN   PGYYDGRYW MWKLPMFGC
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS1_BRANA6.169e-3049.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA8.057e-3050.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_LEMGI8.057e-3063.10Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS_BETVE1.052e-2964.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES1.374e-2955.45Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.374e-2958.43Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_BRANA1.374e-2948.82Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS6_LEMGI1.795e-2961.90Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.795e-2961.90Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.795e-2961.90Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
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