FC923164
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29 Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ PGYYDGRYW MWKLP+FGC Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGC 132
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29 Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 1 Query: 304 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 P M++S T + + GLK T A LP+ S + +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYW MWKLPMFGC Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGC 123
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.344e-29 Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 355 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN R PGYYDGRYW MWKLPMFGC Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGC 123
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29 Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 S+G + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN+ PGYYDGRYW MWKLPMFGC Sbjct: 46 SSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGC 129
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK TS A + + + SNG + +CM+ W P K +E LSYLP L+ + +AKE++Y+L+KGW+PCLEF+ E G V+RE R PGYYDGRYW MWKLPMFGC Sbjct: 28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 60/110 (54.55%), Postives = 78/110 (70.91%), Query Frame = 1 Query: 355 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS + + K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYW MWKLPMFGC Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFRKVGFIFREHNVSPGYYDGRYWTMWKLPMFGC 123
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1 Query: 433 NGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 NG + CM+ W P KKFE LSYLP LS + +AKE+DY+L+ W+PC+EF + G+V+REN PGYYDGRYW MWKLPMFGC Sbjct: 51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGC 133
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29 Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1 Query: 355 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 + GLK + + K ++ +S SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYW MWKLPMFGC Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGC 134
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29 Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1 Query: 430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VHR+ S +P YYDGRYW MWKLPMFGC Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGC 136
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29 Identity = 65/127 (51.18%), Postives = 82/127 (64.57%), Query Frame = 1 Query: 316 SASIFT--APVAGS---GYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681 SA+ FT +P S + GLK S + K + A S SNG + +CMK W KKFE LSYLP++ D+++ K+I+Y+L+ WIPCLEF G+V REN R PGYYDGRYW MWKLPMFGC Sbjct: 9 SAATFTRASPAQSSMVAPFTGLKSASAFPVTRKPN-ADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEFCPKGFVWRENHRSPGYYDGRYWTMWKLPMFGC 134 The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 105
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bpback to top |