FC923164

Overview
NameFC923164
Unique NameFC923164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 52/85 (61.18%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYW MWKLPMFGC
Sbjct:   50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.519e-28
Identity = 63/129 (48.84%), Postives = 82/129 (63.57%), Query Frame = 1
Query:  316 SASIFTAPVAGSG------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            +A   TA  AG+       + GLK  +   +  K S  +SS   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN R PGY DGRYW MWKLPM+GC
Sbjct:    9 AAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLP-SNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 136          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.592e-28
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  361 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            GLK  S A  PV       +   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L KGWIPC+EF+ E  +V+REN R PGY DGRYW MWKLPM+GC
Sbjct:   32 GLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 137          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.385e-28
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  313 MSASIFTAPVAGSG--------YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            + ++  TA V  SG        + GLK  S A  PV       +   SNG + +CM+ W P+  KKFE LSYLP LSD  +  ++ Y+L  GWIPC+EF+ E  +V+REN R PGY DGRYW MWKLPM+GC
Sbjct:    5 LMSNAITAVVGASGAQANMVAPFNGLK--SIASFPVTRKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 52/89 (58.43%), Postives = 66/89 (74.16%), Query Frame = 1
Query:  418 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            +   SNG + +CM  W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSRMPGYYDGRYWAMWKLPMFG 678
            SNG + +CM+ W PI  KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E+++ P YYDGRYW MWKLPMFG
Sbjct:    6 SNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFG 89          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.865e-27
Identity = 49/85 (57.65%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  430 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFGC 681
            SNG + +CMK W   N K++E LSYLP L+ D +A+++DY+L   W+PCLEF+ + G+V+RE+   PGYYDGRYW MWKLPMFGC
Sbjct:   50 SNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGC 134          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  454 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSRMPGYYDGRYWAMWKLPMFG 678
            M+ W P+  KKFE LSYLP L+ + +  E++Y+L KGWIP LEF+ + G+V+RE+ + PGYYDGRYW MWKLPMFG
Sbjct:    1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFG 76          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.775e-22
Identity = 50/95 (52.63%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  427 VSNG--SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGCM 684
            +SNG  SK+R M  W P NNK FE  SYLP L+DD I K++DY+L+  W PCLEF   +  YV  +N+   G     Y D RYW MWKLPMFGC+
Sbjct:   25 LSNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCI 119          
BLAST of FC923164 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.734e-22
Identity = 56/130 (43.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  313 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWAMWKLPMFGC 681
            M+A++ +  +  S     K  SK + P K SI       S   K R M  W P NNK FE  SYLP L+D+ I+K++DY+L   W PCLEF   +  Y   EN    G     Y D RYW MWKLPMFGC
Sbjct:    1 MAATMMSKTIISS-----KQCSKPIAPPKVSINKGFVNTSAAIKNREMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGC 125          
The following BLAST results are available for this feature:
BLAST of FC923164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
RBS1_PETHY1.519e-2861.18Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_AMAHP1.519e-2848.84Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_AMAHP2.592e-2853.70Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_AMAHP3.385e-2846.97Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_MESCR4.421e-2858.43Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_PEA9.848e-2859.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL2.865e-2757.65Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_SPIOL1.627e-2259.21Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_BATOE2.775e-2252.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_ACECL4.734e-2243.08Ribulose bisphosphate carboxylase small chain 6, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701G07EF StrClemenN Citrus clementina cDNA clone C31701G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923164 ID=FC923164; Name=FC923164; organism=Citrus clementina; type=EST; length=697bp
GCTCACCTAAAACTTTTCTCAAAGAAAGTTATCGAGCGGAGAGTAGAAAG
GGTGGTGATGAAACCAAAGCTGTAGACACTCCACTTTCCTTATACAAATC
CTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTAACAAACCATACA
GCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGT
TTCCATTGCCTTGAGAACTAAAATAATTAATTATTACTCTTTTGCTATCT
CGGTCTTAAGTGTCGCCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAG
TGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTC
TGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGG
ATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGA
TGCATGAAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTC
CTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACA
TGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATAT
GTGCACAGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTG
GGCAATGTGGAAGTTGCCAATGTTTGGATGCATGATTCATCTCAATC
back to top